Hg_chrom2_TN10mRNA_2583
Organism: Heterodera glycines Gene Locus: chr2:1445960-1450835 Feature type: polypeptideProtein Sequence
Length: 719
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.647 | 1.423 | 1.113 | 2.734 | 1.715 | 1.248 | 0.53 | 1.321 | 1.298 | 0.902 | 1.37 | 1.391 | 1.391 | 0.615 | 0.624 | 0.934 | 0.638 | 0.569 | 0.642 | 0.532 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2465
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-pJ2_J3
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
chloroplast
|
SPKFLKVFKRKGKA,KRKGKAIIDEHEKQKDK
|
— | — |
35-78
|
0.938
|
— |
0.910
|
0.314
|
0.000
|
— |
0.500
|
0.116
|
0.026
|
0.577
|
0.209
|
0.156
|
0.112
|
0.013
|
0.165
|
0.101
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006606
|
1.000
|
1.000
|
Hsc_gene_24906.t1
|
— | — | — |
KAI1719832.1 IBR domain, a half RING-finger domain-containing protein [Ditylenchus destructor]
|
KAF2864435
|
0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.900|GO:0005575_0.754|GO:0110165_0.754|GO:0008152_0.734|GO:0043170_0.734|GO:0044238_0.712|GO:0019538_0.697|GO:0003674_0.666|GO:0005622_0.654|GO:0065007_0.641|GO:0009987_0.637|GO:0050789_0.633|GO:0050794_0.623|GO:0016020_0.618|GO:0043226_0.595|GO:0009056_0.559|GO:0043229_0.559|GO:0043227_0.550|GO:0005737_0.537|GO:0032502_0.523|GO:0005488_0.521|GO:0048856_0.521|GO:0043231_0.519
|
IPR044066+437-684+|IPR051628+306-406+
|
— | — | — |
PTHR22770+306-406+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
711-719
|
1.000
|
1-710
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.676
|
81847.880
|
4.960
|
-21.500
|
31.154
|
10.292
|
52.573
|
47.427
|
14.743
|
16.412
|
47.566
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
magenta
|
37.566
|
6.856
|
14.432
|
255.245
|
64.462
|
9.874
|
15.207
|
6.359
|
0.000
|
24.686
|
14.106
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
5.077
|
4.257
|
-2.014
|
-2.692
|
— | — |
1.399
|
— |
8.853
|
— | — | — |