Hg_chrom2_TN10mRNA_2595
Organism: Heterodera glycines Gene Locus: chr2:1529115-1547617 Feature type: polypeptideProtein Sequence
Length: 414
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.758 | 0.786 | 0.966 | 0.583 | 0.725 | 1.239 | 1.006 | 0.604 | 1.503 | 1.502 | 0.293 | 2.273 | 2.348 | 1.022 | 1.035 | 0.552 | 0.832 | 1.354 | 0.929 | 0.781 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2477
|
— |
Hg_chrom2_TN10gene_2477
|
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.089
|
0.115
|
0.017
|
0.098
|
0.283
|
0.398
|
0.801
|
0.029
|
0.315
|
0.050
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003201
|
2.000
|
1.000
|
Hsc_gene_24880.t1
|
Hsc_gene_24880.t1
|
— |
Q8N357.1 Solute carrier family 35 member F6 [Homo sapiens]
|
KAI1719955.1 eamA-like transporter family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0005575_0.906|GO:0110165_0.906|GO:0016020_0.858|GO:0005622_0.756|GO:0005737_0.756|GO:0005773_0.708|GO:0043226_0.708|GO:0043227_0.708|GO:0043229_0.708|GO:0043231_0.708|GO:0008150_0.628|GO:0009987_0.585|GO:0000323_0.571|GO:0005764_0.566|GO:0006810_0.546|GO:0051179_0.546|GO:0051234_0.546
|
IPR004853+78-333+|IPR012404+1-380+
|
— |
PF03151+78-333+Triose-phosphate_Transporter_family
|
— |
PTHR13146+1-342+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
381-414
|
1.000
|
1-380
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.531
|
46334.050
|
4.749
|
-8.500
|
17.874
|
13.527
|
35.024
|
64.976
|
8.213
|
9.662
|
48.551
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkgrey
|
1676.352
|
907.343
|
1650.637
|
1353.220
|
1394.381
|
1427.561
|
2258.300
|
999.206
|
2193.536
|
1942.394
|
2050.026
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.635
|
0.439
|
-0.179
|
— | — |
0.672
|
-0.620
|
1.319
|
— | — | — | — | — |
No JSON data available for plots.