Hg_chrom2_TN10mRNA_2599
Organism: Heterodera glycines Gene Locus: chr2:1555306-1557054 Feature type: polypeptideProtein Sequence
Length: 305
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.724 | 0.991 | 0.238 | 0.678 | 0.273 | 0.841 | 0.976 | 0.656 | 3.497 | 1.241 | 0.397 | 2.122 | 3.097 | 0.631 | 0.736 | 1.03 | 1.075 | 0.596 | 0.504 | 1.254 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2480
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
5-25
|
0.932
|
— | — | — | — |
0.000
|
— | — |
0.119
|
0.061
|
0.041
|
0.087
|
0.398
|
0.192
|
0.192
|
0.019
|
0.850
|
0.063
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006610
|
2.000
|
0.000
|
0.000
|
— | — | — |
KAF7632700.1 7TM_GPCR_Srx domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.210
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
— |
IPR000276+33-293+|IPR019424+34-293+|IPR047130+26-293+
|
SM01381+33-293+
|
PF10320+34-293+Serpentine_type_7TM_GPCR_chemoreceptor_Srsx
|
— |
PTHR23360+26-293+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-305
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.856
|
34215.780
|
9.579
|
12.000
|
10.492
|
17.377
|
31.803
|
68.197
|
7.541
|
2.951
|
42.951
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
90.651
|
0.459
|
9.595
|
5.408
|
1.269
|
1.994
|
1.216
|
1.118
|
0.000
|
388.701
|
222.115
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.162
|
3.420
|
— |
-2.099
|
— | — | — | — |
-9.381
|
— |
-7.653
|
— | — |
No JSON data available for plots.