Hg_chrom2_TN10mRNA_2600
Organism: Heterodera glycines Gene Locus: chr2:1557562-1566691 Feature type: polypeptideProtein Sequence
Length: 435
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.535 | 1.176 | 1.129 | 1.506 | 0.881 | 0.707 | 0.684 | 1.264 | 1.584 | 1.243 | 0.94 | 1.217 | 1.405 | 1.105 | 0.798 | 1.478 | 0.791 | 0.836 | 0.884 | 0.676 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2481
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — |
Gland6|KJ825717.1#tn8jg14812.t1
|
— | — | — |
Hg_chrom2_TN10mRNA_2600
|
1-J4_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-23
|
0.941
|
0.800
|
0.000
|
0.000
|
0.078
|
0.127
|
0.016
|
0.202
|
0.181
|
0.125
|
0.129
|
0.003
|
0.114
|
0.835
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001786
|
3.000
|
1.000
|
Hsc_gene_24863.t1
|
Hsc_gene_24853.t1
|
— |
P06868.2 Plasminogen [Bos taurus]
|
AVA09685.1 putative effector protein [Heterodera avenae]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004252|GO:0006508
|
GO:0008150_0.878|GO:0005575_0.756|GO:0003674_0.753|GO:0110165_0.752|GO:0003824_0.614|GO:0016787_0.573|GO:0140096_0.540|GO:0009987_0.521|GO:0008233_0.518
|
IPR001254+132-422_133-427_141-404+|IPR009003+131-428+|IPR043504+120-282_283-413+|IPR051333+79-428+
|
SM00020+132-422+
|
PF00089+141-404+Trypsin
|
— |
PTHR24260+79-428+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-435
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.758
|
48439.450
|
6.415
|
-0.500
|
24.138
|
11.034
|
47.126
|
52.874
|
12.644
|
11.494
|
52.414
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
black
|
1502.814
|
11.382
|
16.484
|
55.417
|
70.639
|
15409.146
|
433.006
|
156.410
|
14.905
|
506.452
|
295.789
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.145
|
1.857
|
— |
7.782
|
-5.146
|
-6.739
|
1.614
|
-5.196
|
— | — | — | — |