Hg_chrom2_TN10mRNA_2603
Organism: Heterodera glycines Gene Locus: chr2:1568170-1569021 Feature type: polypeptideProtein Sequence
Length: 203
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.031 | 1.26 | 0.717 | 1.189 | 0.985 | 1.389 | 0.88 | 1.724 | 1.533 | 0.533 | 0.746 | 2.318 | 1.505 | 1.042 | 0.402 | 1.337 | 0.808 | 1.12 | 0.379 | 0.435 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2483
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— |
Gland6|KJ8257171#tn8jg14812t1
|
Hsc_gene_24862
|
— |
Hg_chrom2_TN10mRNA_2603
|
21-Not_Clustered
|
0.576
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — |
1-19
|
0.997
|
1.000
|
0.000
|
0.000
|
0.611
|
0.348
|
0.030
|
0.490
|
0.081
|
0.193
|
0.067
|
0.089
|
0.159
|
0.249
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000088
|
11.000
|
5.000
|
Hsc_gene_11801.t1;Hsc_gene_19009.t4;Hsc_gene_24840.t1;Hsc_gene_24862.t1;Hsc_gene_24862.t2
|
— | — | — |
AJR19774.1 esophageal gland-localized secretory protein 6 [Heterodera glycines]
|
KAB2634177
|
0.330
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
166-203
|
1.000
|
1-165
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.686
|
21930.880
|
5.845
|
-2.500
|
20.197
|
10.837
|
45.320
|
54.680
|
10.345
|
9.852
|
56.158
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
3157.443
|
2.790
|
4.640
|
1348.859
|
1338.315
|
187.280
|
206.358
|
24.445
|
3048.793
|
10359.959
|
7226.602
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
8.784
|
8.304
|
— |
-2.823
|
— |
-3.054
|
3.223
|
— | — |
-2.818
|
— | — |