Hg_chrom2_TN10mRNA_2604
Organism: Heterodera glycines Gene Locus: chr2:1570450-1570887 Feature type: polypeptideProtein Sequence
Length: 110
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.951 | 1.268 | 0.165 | 0.313 | 0.152 | 1.865 | 0.758 | 0.909 | 2.424 | 1.351 | 0.413 | 0.535 | 2.778 | 0.874 | 0.742 | 1.169 | 1.192 | 0.826 | 0.699 | 1.07 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2484
|
— | — |
1.556
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom2_TN10mRNA_2604
|
— | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane
|
— | — |
9-44
|
0.986
|
— | — | — | — |
0.000
|
— | — |
0.135
|
0.143
|
0.019
|
0.168
|
0.118
|
0.110
|
0.225
|
0.015
|
0.480
|
0.086
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001783
|
3.000
|
1.000
|
Hsc_gene_24856.t1
|
— | — | — |
KAF7627329.1 G_PROTEIN_RECEP_F1_2 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR019424+8-83+
|
— |
PF10320+8-83+Serpentine_type_7TM_GPCR_chemoreceptor_Srsx
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-110
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.838
|
12262.300
|
10.249
|
6.000
|
10.000
|
16.364
|
38.182
|
61.818
|
8.182
|
1.818
|
47.273
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
red
|
37.105
|
10.658
|
10.419
|
6.345
|
5.168
|
5.505
|
4.046
|
3.586
|
5.529
|
141.041
|
82.965
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.885
|
— | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.