Hg_chrom2_TN10mRNA_2608
Organism: Heterodera glycines Gene Locus: chr2:1578860-1583169 Feature type: polypeptideProtein Sequence
Length: 282
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.619 | 1.155 | 0.967 | 1.101 | 0.709 | 0.909 | 0.887 | 1.773 | 1.576 | 1.102 | 0.913 | 1.252 | 1.182 | 0.955 | 0.868 | 1.266 | 0.814 | 1.075 | 1.091 | 0.939 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2487
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom2_TN10mRNA_2608
|
1-Not_Clustered
|
0.938
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.208
|
0.461
|
0.101
|
0.296
|
0.195
|
0.120
|
0.300
|
0.129
|
0.260
|
0.785
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001786
|
3.000
|
1.000
|
Hsc_gene_24863.t1
|
Hsc_gene_24853.t1
|
— | — |
AVA09685.1 putative effector protein [Heterodera avenae]
|
WP_335911748
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004252|GO:0006508
|
GO:0008150_0.833|GO:0005575_0.773|GO:0003674_0.772|GO:0110165_0.765|GO:0003824_0.630|GO:0016787_0.581|GO:0140096_0.550|GO:0008233_0.533|GO:0008152_0.513
|
IPR001254+1-274_10-269_19-254+|IPR009003+18-275+|IPR033116+215-226+|IPR043504+22-280+|IPR051333+20-275+
|
SM00020+10-269+
|
PF00089+19-254+Trypsin
|
— |
PTHR24260+20-275+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-282
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.844
|
31356.910
|
7.855
|
7.000
|
23.404
|
12.411
|
45.745
|
54.255
|
13.830
|
9.574
|
52.128
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
lightyellow
|
542.006
|
5.428
|
10.508
|
22.786
|
29.407
|
3539.292
|
98.277
|
50.679
|
1.896
|
961.211
|
550.076
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.932
|
1.237
|
— |
6.926
|
-5.161
|
-6.237
|
1.101
|
-9.133
|
3.879
|
-4.604
|
— | — |
No JSON data available for plots.