Hg_chrom2_TN10mRNA_2611
Organism: Heterodera glycines Gene Locus: chr2:1586836-1587886 Feature type: polypeptideProtein Sequence
Length: 203
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.031 | 1.604 | 0.806 | 1.019 | 1.067 | 1.516 | 0.938 | 1.478 | 1.533 | 0.533 | 0.672 | 2.318 | 1.368 | 1.042 | 0.302 | 1.126 | 0.727 | 1.12 | 0.379 | 0.724 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2489
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— |
Gland6|KJ8257171#tn8jg14812t1
|
Hsc_gene_24862;Hsc_gene_24873;Hsc_gene_24850
|
— |
Hg_chrom2_TN10mRNA_2611
|
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — |
1-19
|
0.996
|
1.000
|
0.000
|
0.000
|
0.695
|
0.357
|
0.021
|
0.419
|
0.097
|
0.121
|
0.064
|
0.015
|
0.137
|
0.220
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000088
|
11.000
|
5.000
|
Hsc_gene_11801.t1;Hsc_gene_19009.t4;Hsc_gene_24840.t1;Hsc_gene_24862.t1;Hsc_gene_24862.t2
|
— | — | — |
AJR19774.1 esophageal gland-localized secretory protein 6 [Heterodera glycines]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
124-203
|
1.000
|
1-123
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.568
|
21994.770
|
4.677
|
-7.000
|
19.704
|
10.837
|
44.828
|
55.172
|
8.867
|
10.837
|
56.158
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
3424.639
|
1.398
|
4.935
|
371.876
|
1089.353
|
86.921
|
135.548
|
7.336
|
981.305
|
13610.305
|
8197.876
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
7.923
|
6.355
|
1.520
|
-3.634
|
0.652
|
-3.690
|
4.357
|
— | — |
-3.511
|
— | — |