SCN Proteipedia

Hg_chrom2_TN10mRNA_2612

Organism: Heterodera glycines Gene Locus: chr2:1593043-1597577 Feature type: polypeptide

Protein Sequence

Length: 399

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.845	0.35	1.048	0.432	1.003	0.964	0.865	0.877	1.281	1.152	0.646	2.506	1.253	1.205	1.534	0.859	0.74	1.215	1.35	1.179	0.0

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Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_2490	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	Hg_chrom2_TN10mRNA_2612	27-ppJ2_pJ2_J3_J4_Female_Male	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	mitochondrial_transit_peptide	mitochondrion	—	—	—	—	—	—	—	—	0.000	—	—	0.072	0.897	0.009	0.326	0.046	0.084	0.087	0.037	0.047	0.081

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001787	2.000	2.000	Hsc_gene_1463.t1;Hsc_gene_24846.t1	Hsc_gene_24845.t1;Hsc_gene_24846.t1	—	P54688.2 Branched-chain-amino-acid aminotransferase, cytosolic [Caenorhabditis elegans]	KAI3412183.1 branched-chain-amino-acid aminotransferase [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003824\|GO:0004084\|GO:0009081	GO:0008150_0.827\|GO:0009987_0.759\|GO:0005575_0.716\|GO:0110165_0.713\|GO:0003674_0.710\|GO:0008152_0.674\|GO:0044237_0.642\|GO:0005622_0.626\|GO:0044238_0.620\|GO:0003824_0.617\|GO:0044281_0.598\|GO:0005737_0.594\|GO:0006082_0.564\|GO:0043436_0.563\|GO:0016020_0.551\|GO:0019752_0.544\|GO:0016740_0.532\|GO:0006520_0.530	IPR001544+101-326+\|IPR005786+22-398_28-399+\|IPR018300+262-297+\|IPR033939+87-387+\|IPR036038+46-389+\|IPR043131+25-204+\|IPR043132+205-385+	—	PF01063+101-326+Amino-transferase_class_IV	G3DSA:3.30.470.10:FF:000002+24-204+Branched-chain-amino-acid_aminotransferase	PTHR11825+22-398+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-399	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.657	45180.240	7.385	3.500	25.313	12.030	41.103	58.897	13.534	11.779	47.870

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	lightyellow	darkorange	256.908	103.172	371.263	162.305	390.064	301.352	478.758	564.579	42.184	203.024	134.093

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.621	0.516	-1.087	1.232	-0.357	0.678	0.797	—	—	—	—	—	—

No JSON data available for plots.

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