Hg_chrom2_TN10mRNA_2614
Organism: Heterodera glycines Gene Locus: chr2:1601247-1604479 Feature type: polypeptideProtein Sequence
Length: 448
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.597 | 1.765 | 1.177 | 0.77 | 0.893 | 0.687 | 0.399 | 1.786 | 2.034 | 1.418 | 0.981 | 1.05 | 1.612 | 0.859 | 0.957 | 0.957 | 0.512 | 0.846 | 2.06 | 0.788 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2492
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom2_TN10mRNA_2614
|
17-ppJ2_pJ2
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— | — |
6-38
|
0.958
|
— | — | — | — |
0.001
|
— | — |
0.119
|
0.056
|
0.002
|
0.211
|
0.325
|
0.102
|
0.882
|
0.010
|
0.121
|
0.281
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006612
|
1.000
|
1.000
|
Hsc_gene_24843.t1
|
Hsc_gene_24843.t1
|
— |
Q09326.1 Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase [Rattus norvegicus]
|
KHN70847.1 Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005795|GO:0008455|GO:0009312|GO:0016020
|
GO:0003674_0.871|GO:0008150_0.765|GO:0003824_0.756|GO:0016740_0.693|GO:0140096_0.688|GO:0016757_0.659|GO:0016758_0.659|GO:0008194_0.650|GO:0008375_0.650|GO:0008455_0.650|GO:0140103_0.650|GO:0009987_0.596|GO:0008152_0.584|GO:0044238_0.571|GO:0009058_0.551|GO:0005575_0.511|GO:0110165_0.509
|
IPR007754+20-428_119-197_205-425+|IPR029044+127-372_128-379+
|
— |
PF05060+119-197_205-425+N-acetylglucosaminyltransferase_II_(MGAT2)
|
— |
PTHR12871+20-428+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
411-448
|
1.000
|
1-410
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.648
|
52059.970
|
7.043
|
5.000
|
26.562
|
14.732
|
46.652
|
53.348
|
14.732
|
11.830
|
44.643
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
366.130
|
7.707
|
206.149
|
96.004
|
50.898
|
22.342
|
11.857
|
71.004
|
336.749
|
1174.522
|
815.476
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.517
|
3.507
|
-0.993
|
-0.951
|
-1.171
|
-0.908
|
1.570
|
-2.445
|
— | — | — | — | — |
No JSON data available for plots.