Hg_chrom2_TN10mRNA_2618
Organism: Heterodera glycines Gene Locus: chr2:1611437-1615316 Feature type: polypeptideProtein Sequence
Length: 217
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.232 | 1.072 | 1.257 | 0.636 | 0.998 | 1.3 | 0.329 | 1.382 | 1.126 | 1.37 | 0.978 | 0.813 | 1.408 | 1.329 | 1.129 | 0.724 | 0.453 | 0.908 | 1.418 | 0.949 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2495
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom2_TN10mRNA_2618
|
26-Not_Clustered
|
0.465
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.358
|
0.412
|
0.034
|
0.739
|
0.169
|
0.229
|
0.214
|
0.099
|
0.127
|
0.234
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006613
|
1.000
|
1.000
|
Hsc_gene_24841.t1
|
Hsc_gene_24841.t1
|
— |
Q9VHD2.1 Probable maleylacetoacetate isomerase 2 [Drosophila melanogaster]
|
KAI1713209.1 putative maleylacetoacetate isomerase 2 [Ditylenchus destructor]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824|GO:0005737|GO:0009072
|
GO:0008150_0.858|GO:0009987_0.758|GO:0008152_0.725|GO:0003674_0.681|GO:0044237_0.659|GO:0005575_0.526|GO:0110165_0.522
|
IPR004045+3-84_7-78+|IPR004046+123-199+|IPR005955+7-210+|IPR010987+90-212+|IPR034330+91-202+|IPR034333+5-77+|IPR036249+5-89+|IPR036282+85-210+|IPR040079+7-188+
|
— |
PF02798+7-78+Glutathione_S-transferase,_N-terminal_domain|PF14497+123-199+Glutathione_S-transferase,_C-terminal_domain
|
G3DSA:1.20.1050.10:FF:000010+88-216+Maleylacetoacetate_isomerase_isoform_1
|
PTHR42673+1-210+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
199-217
|
1.000
|
1-198
|
5f06_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.525
|
24798.360
|
6.746
|
1.000
|
27.650
|
12.903
|
45.161
|
54.839
|
14.747
|
12.903
|
47.465
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
612.700
|
389.332
|
323.003
|
245.883
|
783.841
|
569.293
|
613.916
|
387.788
|
84.956
|
1374.448
|
821.808
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.500
|
-0.800
|
-0.284
|
1.641
|
-0.447
|
— |
-0.661
|
0.805
|
-4.141
|
— | — | — | — |
No JSON data available for plots.