Hg_chrom2_TN10mRNA_2623
Organism: Heterodera glycines Gene Locus: chr2:1634564-1635663 Feature type: polypeptideProtein Sequence
Length: 187
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.622 | 0.373 | 1.653 | 0.184 | 1.07 | 1.234 | 1.019 | 0.802 | 1.664 | 1.734 | 1.134 | 1.887 | 1.04 | 0.411 | 1.2 | 0.611 | 0.964 | 1.215 | 0.0 | 0.315 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2500
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — |
Hsc_gene_24836
|
— |
Hg_chrom2_TN10mRNA_2623
|
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — |
1-24
|
0.975
|
1.000
|
0.000
|
0.000
|
0.643
|
0.137
|
0.043
|
0.420
|
0.223
|
0.056
|
0.058
|
0.028
|
0.124
|
0.216
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003203
|
2.000
|
1.000
|
Hsc_gene_24836.t1
|
Hsc_gene_24836.t1
|
— |
P0CG83.1 Polyubiquitin [Hordeum vulgare]
|
XP_004335788.1 polyubiquitin, putative [Acanthamoeba castellanii str. Neff];ELR13775.1 polyubiquitin, putative [Acanthamoeba castellanii str. Neff]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.825|GO:0110165_0.825|GO:0005622_0.729|GO:0016020_0.665|GO:0043226_0.632|GO:0008150_0.627|GO:0043229_0.613|GO:0005737_0.602|GO:0003674_0.583|GO:0043227_0.561|GO:0043231_0.536
|
IPR000626+25-96_25-100_27-98_101-172_101-176_103-174+|IPR019954+51-76_127-152+|IPR019956+35-55_56-76_77-98+|IPR029071+17-100_100-178+|IPR050158+101-176+
|
SM00213+25-96_101-172+
|
PF00240+27-98_103-174+Ubiquitin_family
|
G3DSA:3.10.20.90:FF:000005+25-100+Polyubiquitin_11|G3DSA:3.10.20.90:FF:000009+101-177+Ubiquitin-60S_ribosomal_protein
|
PTHR10666+101-176+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-187
|
5vix_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.661
|
20798.110
|
5.360
|
-2.500
|
30.481
|
6.417
|
47.059
|
52.941
|
14.973
|
15.508
|
45.455
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
712.243
|
0.447
|
3.243
|
415.060
|
422.580
|
32.588
|
74.288
|
13.511
|
326.547
|
2510.511
|
1574.526
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.610
|
9.706
|
7.122
|
— |
-3.683
|
1.201
|
-1.380
|
2.606
|
— | — | — | — | — |