Hg_chrom2_TN10mRNA_2630
Organism: Heterodera glycines Gene Locus: chr2:1705412-1707091 Feature type: polypeptideProtein Sequence
Length: 277
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.588 | 0.672 | 0.722 | 0.747 | 0.963 | 4.351 | 0.387 | 1.625 | 1.203 | 0.878 | 1.149 | 0.849 | 1.203 | 1.25 | 1.326 | 0.619 | 1.124 | 0.656 | 0.833 | 0.531 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2507
|
— | — |
1.222
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.533
|
0.095
|
0.013
|
0.472
|
0.109
|
0.057
|
0.052
|
0.008
|
0.116
|
0.432
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_4135.t1
|
— |
P68202.2 Ubiquitin-ribosomal protein eS31 fusion protein [Plutella xylostella]
|
AFP20579.1 ubiquitin-like protein, partial [Trypoxylus dichotomus]
|
No
|
0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.920|GO:0110165_0.918|GO:0005622_0.880|GO:0043226_0.781|GO:0043229_0.760|GO:0016020_0.717|GO:0005737_0.687|GO:0043227_0.633|GO:0003674_0.625|GO:0043231_0.617|GO:0008150_0.557
|
IPR000626+2-73_2-77_4-74+|IPR019954+28-53+|IPR019956+12-32_33-53_54-75+|IPR029071+1-78+|IPR050158+3-144+
|
SM00213+2-73+
|
PF00240+4-74+Ubiquitin_family
|
G3DSA:3.10.20.90:FF:000009+2-78+Ubiquitin-60S_ribosomal_protein
|
PTHR10666+3-144+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
156-277
|
1.000
|
1-155
|
8yum_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.625
|
32452.810
|
10.005
|
16.500
|
27.076
|
10.469
|
58.123
|
41.877
|
17.329
|
9.747
|
39.350
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
46.026
|
0.462
|
1.484
|
1.011
|
1.743
|
7.407
|
1.936
|
4.846
|
12.335
|
185.029
|
111.017
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
2.107
|
-1.924
|
— | — | — | — |
-6.027
|
— | — |
No JSON data available for plots.