Hg_chrom2_TN10mRNA_2631
Organism: Heterodera glycines Gene Locus: chr2:1746376-1748329 Feature type: polypeptideProtein Sequence
Length: 296
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.904 | 1.257 | 0.246 | 0.815 | 0.225 | 1.213 | 0.362 | 0.676 | 2.327 | 1.826 | 0.614 | 1.987 | 2.346 | 0.845 | 0.758 | 0.724 | 0.72 | 1.126 | 1.04 | 1.888 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2508
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
38-58
|
0.845
|
— | — | — | — |
0.000
|
— | — |
0.154
|
0.088
|
0.016
|
0.101
|
0.316
|
0.114
|
0.155
|
0.054
|
0.735
|
0.065
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001788
|
1.000
|
3.000
|
Hsc_gene_24833.t1;Hsc_gene_24833.t2;Hsc_gene_24835.t1
|
— | — | — |
KAF7639023.1 Serpentine receptor class gamma [Meloidogyne graminicola]
|
No
|
-0.250
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004888|GO:0007606|GO:0016020
|
— |
IPR000609+4-30_14-148_44-67_90-114_127-152+
|
— |
PF02118+14-148+Srg_family_chemoreceptor
|
— |
PTHR31552+13-266+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-296
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.608
|
34224.120
|
9.791
|
17.000
|
11.824
|
17.568
|
31.419
|
68.581
|
9.122
|
2.703
|
41.216
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
salmon
|
4.751
|
0.154
|
4.229
|
3.482
|
1.596
|
0.758
|
2.027
|
0.000
|
0.000
|
16.191
|
9.252
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.554
|
4.370
|
— | — | — | — | — |
4.875
|
— | — | — | — | — |
No JSON data available for plots.