Hg_chrom2_TN10mRNA_2632
Organism: Heterodera glycines Gene Locus: chr2:1748504-1750676 Feature type: polypeptideProtein Sequence
Length: 331
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.808 | 1.405 | 1.318 | 3.542 | 1.108 | 0.852 | 0.575 | 1.662 | 1.343 | 0.817 | 1.556 | 1.777 | 1.846 | 0.465 | 0.802 | 0.734 | 0.347 | 0.458 | 0.465 | 0.622 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2509
|
— | — |
1.444
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
3.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
nucleus
|
KKKFFTPFSKKFDRK
|
— | — | — | — | — |
0.802
|
0.369
|
0.000
|
— |
0.437
|
0.195
|
0.003
|
0.614
|
0.161
|
0.097
|
0.150
|
0.010
|
0.080
|
0.081
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006615
|
1.000
|
1.000
|
Hsc_gene_24832.t1
|
Hsc_gene_24832.t1
|
— | — |
KAI1719832.1 IBR domain, a half RING-finger domain-containing protein [Ditylenchus destructor]
|
KYQ90833
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.818|GO:0005575_0.782|GO:0110165_0.782|GO:0005622_0.716|GO:0008152_0.679|GO:0044238_0.670|GO:0043170_0.668|GO:0065007_0.641|GO:0009987_0.634|GO:0050789_0.633|GO:0003674_0.631|GO:0019538_0.626|GO:0005737_0.615|GO:0050794_0.613|GO:0050896_0.591|GO:0051716_0.558|GO:0023052_0.540|GO:0007154_0.537|GO:0048518_0.532|GO:0048522_0.519|GO:0007165_0.518|GO:0005829_0.502
|
IPR044066+35-277+|IPR051628+37-290+
|
— | — | — |
PTHR22770+37-290+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
330-331
|
1.000
|
1-329
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.582
|
37810.640
|
7.313
|
6.500
|
31.420
|
12.689
|
48.036
|
51.964
|
17.523
|
13.897
|
48.036
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
339.730
|
1.227
|
7.937
|
49.890
|
35.825
|
5.535
|
4.952
|
1.387
|
80.163
|
1386.163
|
826.449
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.469
|
5.212
|
2.765
|
-0.510
|
-2.681
|
— |
-2.098
|
1.969
|
— | — |
-4.755
|
— | — |