Hg_chrom2_TN10mRNA_2635
Organism: Heterodera glycines Gene Locus: chr2:1763514-1764467 Feature type: polypeptideProtein Sequence
Length: 134
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.607 | 1.909 | 0.678 | 1.029 | 0.995 | 0.574 | 0.444 | 1.119 | 1.824 | 0.908 | 0.791 | 2.195 | 1.244 | 0.861 | 1.98 | 1.173 | 0.734 | 0.905 | 1.148 | 0.878 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2512
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm|nucleus
|
— | — | — | — |
3-23
|
0.999
|
— | — |
0.000
|
— | — |
0.524
|
0.450
|
0.033
|
0.676
|
0.253
|
0.054
|
0.083
|
0.421
|
0.288
|
0.053
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006616
|
1.000
|
1.000
|
Hsc_gene_24446.t1
|
Hsc_gene_24446.t1
|
— |
P48817.1 Nucleoside diphosphate kinase [Brugia malayi]
|
KAI1724812.1 nucleoside diphosphate kinase domain-containing protein [Ditylenchus destructor]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004550|GO:0006183|GO:0006228|GO:0006241
|
GO:0005575_0.840|GO:0110165_0.840|GO:0005622_0.745|GO:0008150_0.704|GO:0043226_0.644|GO:0016020_0.643|GO:0043229_0.639|GO:0003674_0.632|GO:0043227_0.612|GO:0005737_0.608|GO:0043231_0.604|GO:0009987_0.557
|
IPR001564+2-24_46-65_66-83+|IPR034907+1-129_2-126+|IPR036850+1-127_1-131+
|
SM00562+1-129+
|
PF00334+2-126+Nucleoside_diphosphate_kinase
|
G3DSA:3.30.70.141:FF:000039+1-133+Nucleoside_diphosphate_kinase_B
|
PTHR11349+1-127+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-134
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.808
|
15567.950
|
9.850
|
8.500
|
26.866
|
11.194
|
50.000
|
50.000
|
17.164
|
9.701
|
47.015
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
turquoise
|
425.547
|
114.884
|
240.046
|
359.923
|
498.282
|
843.499
|
1129.583
|
769.072
|
54.826
|
337.416
|
216.306
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.834
|
1.511
|
0.693
|
0.436
|
0.774
|
0.432
|
— |
0.700
|
— | — | — | — | — |
No JSON data available for plots.