Hg_chrom2_TN10mRNA_2637
Organism: Heterodera glycines Gene Locus: chr2:1772175-1779492 Feature type: polypeptideProtein Sequence
Length: 526
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.348 | 0.973 | 0.864 | 0.524 | 0.919 | 0.731 | 0.679 | 0.856 | 1.141 | 1.49 | 0.778 | 1.901 | 1.584 | 1.133 | 1.009 | 0.869 | 0.686 | 1.037 | 1.316 | 0.671 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2514
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.184
|
0.353
|
0.035
|
0.376
|
0.632
|
0.321
|
0.414
|
0.029
|
0.220
|
0.113
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006618
|
1.000
|
1.000
|
Hsc_gene_24448.t1
|
Hsc_gene_24448.t1
|
— |
Q05AM4.1 Fatty-acid amide hydrolase 2-B [Danio rerio]
|
KAI1718232.1 amidase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.743|GO:0005575_0.730|GO:0110165_0.721|GO:0003674_0.669|GO:0005622_0.572|GO:0003824_0.563|GO:0016020_0.539|GO:0009987_0.530|GO:0008152_0.520|GO:0043226_0.501
|
IPR020556+212-243+|IPR023631+74-509+|IPR036928+44-520_46-523+|IPR052739+48-524+
|
— |
PF01425+74-509+Amidase
|
— |
PTHR43372+48-524+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-526
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.672
|
58188.500
|
7.154
|
3.500
|
22.053
|
11.407
|
39.354
|
60.646
|
11.787
|
10.266
|
50.760
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
greenyellow
|
1927.783
|
1923.517
|
1249.088
|
1658.892
|
1772.596
|
1688.544
|
1545.969
|
1270.236
|
347.142
|
4007.877
|
2438.991
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.852
|
-0.351
|
0.518
|
— | — | — |
-0.512
|
0.424
|
-3.638
|
2.445
|
— | — | — |
No JSON data available for plots.