Hg_chrom2_TN10mRNA_2639
Organism: Heterodera glycines Gene Locus: chr2:1790476-1791927 Feature type: polypeptideProtein Sequence
Length: 411
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.82 | 1.358 | 1.194 | 0.671 | 1.014 | 0.686 | 0.898 | 0.852 | 1.46 | 0.888 | 1.364 | 1.288 | 1.419 | 0.889 | 1.291 | 0.521 | 0.878 | 1.18 | 1.684 | 0.358 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2516
|
— | — |
1.333
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
nucleus
|
— | — |
46-66
|
0.995
|
— | — | — | — |
0.000
|
— | — |
0.854
|
0.391
|
0.048
|
0.309
|
0.226
|
0.117
|
0.106
|
0.021
|
0.088
|
0.142
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000506
|
5.000
|
2.000
|
Hsc_gene_22209.t2;Hsc_gene_22209.t3
|
Hsc_gene_1374.t1;Hsc_gene_14869.t1;Hsc_gene_15945.t1;Hsc_gene_20712.t1;Hsc_gene_22209.t2;Hsc_gene_22209.t3;Hsc_gene_4704.t1;Hsc_gene_4704.t2;Hsc_gene_8873.t1
|
— | — |
KAH7723580.1 pogo transposable element with KRAB domain-like protein [Aphelenchus avenae]
|
No
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676
|
GO:0005575_0.873|GO:0110165_0.873|GO:0005622_0.807|GO:0016020_0.783|GO:0043226_0.758|GO:0043229_0.748|GO:0043227_0.714|GO:0043231_0.698|GO:0005634_0.606
|
IPR004875+163-335+|IPR006600+22-90_28-90_32-90+|IPR009057+27-85+|IPR050863+22-373+
|
SM00674+28-90+
|
PF03184+163-335+DDE_superfamily_endonuclease|PF03221+32-90+Tc5_transposase_DNA-binding_domain
|
— |
PTHR19303+22-373+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-34
|
1.000
|
35-411
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.825
|
46341.330
|
9.493
|
14.500
|
29.684
|
10.219
|
47.202
|
52.798
|
17.032
|
12.652
|
50.365
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
brown
|
1.146
|
1.763
|
3.777
|
2.434
|
2.855
|
0.758
|
0.405
|
1.375
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.