Hg_chrom2_TN10mRNA_2641
Organism: Heterodera glycines Gene Locus: chr2:1815080-1818162 Feature type: polypeptideProtein Sequence
Length: 226
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.772 | 1.132 | 0.805 | 1.373 | 1.327 | 1.135 | 0.579 | 2.212 | 1.672 | 1.136 | 0.805 | 1.562 | 1.352 | 1.021 | 1.355 | 1.011 | 0.508 | 0.603 | 0.34 | 0.911 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2518
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
nucleus
|
RRHRRRHR
|
— | — | — | — |
1-25
|
0.968
|
1.000
|
0.000
|
0.000
|
0.343
|
0.614
|
0.022
|
0.157
|
0.057
|
0.041
|
0.114
|
0.096
|
0.177
|
0.863
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006620
|
1.000
|
1.000
|
Hsc_gene_24820.t1
|
Hsc_gene_24820.t1
|
— |
Q21540.2 Cuticlin-6 [Caenorhabditis elegans]
|
CDJ85888.1 Protein CUTL-6 [Haemonchus contortus]
|
No
|
-0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.901|GO:0110165_0.892|GO:0071944_0.681|GO:0030312_0.555|GO:0031012_0.546|GO:0062023_0.545|GO:0060102_0.540
|
IPR001507+1-226+|IPR051962+59-137+
|
— | — | — |
PTHR22907+59-137+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-226
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.664
|
25870.610
|
7.180
|
4.000
|
28.761
|
12.832
|
48.230
|
51.770
|
16.372
|
12.389
|
44.248
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
53.516
|
9.242
|
44.525
|
37.533
|
112.120
|
69.137
|
12.146
|
36.911
|
28.879
|
91.867
|
64.872
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.044
|
1.888
|
— |
1.548
|
-0.682
|
-2.507
|
-1.007
|
-1.471
|
— | — | — | — | — |