Hg_chrom2_TN10mRNA_2646
Organism: Heterodera glycines Gene Locus: chr2:1828166-1831908 Feature type: polypeptideProtein Sequence
Length: 436
(Signal peptide: 1-26)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.533 | 1.227 | 0.959 | 0.949 | 1.261 | 1.47 | 0.573 | 1.032 | 1.784 | 1.054 | 1.112 | 1.349 | 1.975 | 0.838 | 0.936 | 0.917 | 0.752 | 0.695 | 0.882 | 1.079 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2522
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
30-pJ2
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
— | — | — | — | — | — |
1-26
|
0.851
|
1.000
|
0.000
|
0.000
|
0.185
|
0.264
|
0.014
|
0.587
|
0.349
|
0.504
|
0.581
|
0.002
|
0.526
|
0.083
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000524
|
4.000
|
3.000
|
Hsc_gene_24440.t1;Hsc_gene_24445.t1;Hsc_gene_24823.t1
|
— | — | — |
KAI3420035.1 hypothetical protein GPALN_003369 [Globodera pallida]
|
XP_002261328
|
0.350
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008233
|
— |
IPR008580+269-430_282-426_284-393+|IPR042266+263-419+
|
SM01179+269-430+
|
PF05903+284-393+PPPDE_putative_peptidase_domain
|
— |
PTHR12378+282-426+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
418-436
|
1.000
|
1-417
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.586
|
50582.880
|
6.578
|
0.500
|
26.835
|
13.991
|
48.853
|
51.147
|
13.991
|
12.844
|
42.661
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
green
|
87.255
|
2.833
|
15.713
|
149.701
|
34.251
|
4.741
|
4.258
|
1.258
|
266.214
|
102.296
|
172.547
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.243
|
5.589
|
3.359
|
-2.163
|
-2.834
|
— | — | — | — | — | — | — | — |