Hg_chrom2_TN10mRNA_2657
Organism: Heterodera glycines Gene Locus: chr2:1881669-1884910 Feature type: polypeptideProtein Sequence
Length: 506
(Signal peptide: 1-33)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.666 | 1.149 | 1.006 | 0.341 | 1.087 | 1.267 | 0.565 | 0.889 | 1.493 | 1.175 | 1.437 | 2.093 | 2.086 | 0.646 | 1.008 | 0.875 | 1.037 | 0.479 | 0.608 | 1.221 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2531
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
17-ppJ2_pJ2
|
0.984
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cell_membrane
|
nucleus
|
KQRKALKKIRP
|
— | — | — | — |
1-33
|
— |
0.998
|
— |
0.000
|
0.281
|
0.248
|
0.028
|
0.326
|
0.134
|
0.387
|
0.326
|
0.001
|
0.467
|
0.351
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006625
|
1.000
|
1.000
|
Hsc_gene_24427.t1
|
Hsc_gene_24427.t1
|
— | — |
KAI3418200.1 hypothetical protein GPALN_010417 [Globodera pallida]
|
XP_024573546
|
0.400
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046488|GO:0052742
|
GO:0003674_0.839|GO:0003824_0.717|GO:0005575_0.700|GO:0110165_0.698|GO:0016740_0.681|GO:0016772_0.660|GO:0008150_0.659|GO:0016301_0.655|GO:0016773_0.654|GO:0001727_0.650|GO:0016308_0.650|GO:0052742_0.650|GO:0016020_0.638|GO:0009987_0.610|GO:0005622_0.608|GO:0071944_0.578|GO:0005737_0.563|GO:0005886_0.561
|
IPR002498+52-478_96-479_194-475+|IPR023610+103-479+|IPR027483+277-493+|IPR027484+66-257+
|
SM00330+96-479+
|
PF01504+194-475+Phosphatidylinositol-4-phosphate_5-Kinase
|
— |
PTHR23086+103-479+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-506
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.742
|
58918.760
|
9.496
|
16.500
|
28.261
|
14.229
|
50.593
|
49.407
|
16.206
|
12.055
|
40.909
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
882.056
|
0.766
|
300.185
|
521.360
|
51.876
|
2.411
|
5.779
|
15.886
|
3914.844
|
586.013
|
2012.655
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
8.388
|
9.275
|
0.904
|
-3.367
|
-4.417
|
— |
2.630
|
— | — |
-2.734
|
— | — | — |