Hg_chrom2_TN10mRNA_2667
Organism: Heterodera glycines Gene Locus: chr2:1929927-1932129 Feature type: polypeptideProtein Sequence
Length: 254
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.778 | 1.099 | 1.217 | 0.407 | 1.181 | 1.211 | 1.359 | 2.362 | 1.137 | 0.958 | 0.716 | 1.621 | 0.547 | 0.681 | 0.964 | 0.731 | 0.968 | 0.954 | 1.514 | 1.042 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2539
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
Hsc_gene_24410
|
— | — |
17-ppJ2_pJ2
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.386
|
0.096
|
0.018
|
0.529
|
0.124
|
0.025
|
0.021
|
0.014
|
0.175
|
0.167
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000377
|
6.000
|
2.000
|
Hsc_gene_13924.t1;Hsc_gene_21019.t1
|
Hsc_gene_24410.t1;Hsc_gene_24410.t2
|
— |
Q9QUR6.1 Prolyl endopeptidase [Mus musculus]
|
KAI1718289.1 prolyl oligopeptidase family domain-containing protein [Ditylenchus destructor]
|
No
|
0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004252|GO:0006508|GO:0008236
|
GO:0003674_0.748|GO:0008150_0.744|GO:0005575_0.707|GO:0110165_0.700|GO:0003824_0.637|GO:0005622_0.620|GO:0008152_0.580|GO:0016787_0.576|GO:0005737_0.573|GO:0140096_0.548|GO:0043170_0.542|GO:0008233_0.539
|
IPR001375+13-173+|IPR002470+19-39_74-89_95-117+|IPR029058+12-168_15-171+|IPR051167+12-175+
|
— |
PF00326+13-173+Prolyl_oligopeptidase_family
|
— |
PTHR42881+12-175+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
184-254
|
1.000
|
1-183
|
3ddu_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.507
|
28106.300
|
5.710
|
-5.000
|
27.953
|
12.205
|
48.425
|
51.575
|
14.173
|
13.780
|
51.575
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
113.970
|
12.512
|
148.437
|
33.765
|
18.052
|
25.186
|
12.468
|
12.361
|
97.904
|
326.649
|
228.616
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.336
|
1.294
|
-2.027
|
-0.931
|
— |
-1.006
|
-1.130
|
— | — | — | — | — | — |
No JSON data available for plots.