Hg_chrom2_TN10mRNA_2668
Organism: Heterodera glycines Gene Locus: chr2:1937811-1939885 Feature type: polypeptideProtein Sequence
Length: 249
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.607 | 0.841 | 1.095 | 0.415 | 1.004 | 0.618 | 0.956 | 2.008 | 1.339 | 0.977 | 0.73 | 0.472 | 2.008 | 0.772 | 1.147 | 1.033 | 0.856 | 1.278 | 1.545 | 1.417 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2540
|
— | — |
2.111
|
2.000
|
2.000
|
1.000
|
2.000
|
3.000
|
3.000
|
2.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
Hsc_gene_24410
|
— | — |
14-Not_described
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.188
|
0.381
|
0.345
|
0.664
|
0.319
|
0.291
|
0.268
|
0.063
|
0.216
|
0.296
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003209
|
1.000
|
2.000
|
Hsc_gene_24410.t1;Hsc_gene_24410.t2
|
Hsc_gene_21019.t1;Hsc_gene_24410.t1;Hsc_gene_24410.t2
|
— |
Q9QUR6.1 Prolyl endopeptidase [Mus musculus]
|
KAI1731263.1 prolyl oligopeptidase family domain-containing protein [Ditylenchus destructor]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004252|GO:0006508|GO:0008236
|
GO:0003674_0.732|GO:0008150_0.727|GO:0005575_0.717|GO:0110165_0.706|GO:0003824_0.672|GO:0005622_0.631|GO:0005737_0.631|GO:0016787_0.573|GO:0008152_0.549|GO:0140096_0.541|GO:0008233_0.536
|
IPR001375+177-237+|IPR002470+157-175_184-208_212-231+|IPR023302+9-99+|IPR029058+111-237_126-238+|IPR051167+9-237+
|
— |
PF00326+177-237+Prolyl_oligopeptidase_family|PF02897+9-99+Prolyl_oligopeptidase,_N-terminal_beta-propeller_domain
|
— |
PTHR42881+9-237+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-249
|
6jym_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.612
|
28417.130
|
6.657
|
1.000
|
26.506
|
18.072
|
44.980
|
55.020
|
14.458
|
12.048
|
48.996
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
pink
|
108.788
|
24.172
|
4.757
|
20.231
|
13.462
|
14.667
|
14.230
|
6.093
|
35.546
|
412.684
|
251.053
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.578
|
— |
2.201
|
— | — | — |
-1.376
|
1.369
|
-3.645
|
— |
-4.772
|
— | — |
No JSON data available for plots.