Hg_chrom2_TN10mRNA_2671
Organism: Heterodera glycines Gene Locus: chr2:1951594-1957342 Feature type: polypeptideProtein Sequence
Length: 508
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.076 | 1.099 | 1.145 | 0.272 | 0.755 | 1.868 | 0.726 | 1.28 | 0.744 | 1.091 | 0.716 | 1.621 | 1.476 | 0.379 | 1.286 | 1.181 | 0.839 | 1.193 | 1.969 | 0.637 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2543
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.812
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.423
|
0.197
|
0.037
|
0.474
|
0.131
|
0.246
|
0.258
|
0.057
|
0.190
|
0.210
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006630
|
1.000
|
1.000
|
Hsc_gene_24419.t1
|
Hsc_gene_24419.t1;Hsc_gene_24420.t1
|
— |
Q23552.2 Phosphoethanolamine N-methyltransferase 1 [Caenorhabditis elegans]
|
KAI1727707.1 methyltransferase domain-containing protein [Ditylenchus destructor]
|
No
|
-0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.953|GO:0009987_0.864|GO:0003674_0.776|GO:0008152_0.764|GO:0009058_0.667|GO:0044238_0.647|GO:0044237_0.583|GO:0044249_0.550|GO:0003824_0.540|GO:0032501_0.528|GO:0032502_0.525|GO:0048856_0.525
|
IPR029063+13-282_16-214+|IPR041698+61-156+
|
— |
PF13649+61-156+Methyltransferase_domain
|
— |
PTHR44307+10-262+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-508
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.670
|
57340.620
|
7.865
|
7.500
|
24.409
|
12.598
|
49.803
|
50.197
|
13.583
|
10.827
|
50.394
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
1733.418
|
94.842
|
327.782
|
918.527
|
1284.603
|
3390.189
|
1797.167
|
6723.159
|
282.776
|
1920.518
|
1218.629
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.562
|
3.139
|
1.593
|
0.452
|
1.416
|
-0.907
|
0.869
|
-1.757
|
-2.857
|
— | — | — | — |
No JSON data available for plots.