Hg_chrom2_TN10mRNA_2673
Organism: Heterodera glycines Gene Locus: chr2:1966868-1969849 Feature type: polypeptideProtein Sequence
Length: 409
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.768 | 2.502 | 1.2 | 0.253 | 0.937 | 1.066 | 0.437 | 1.222 | 1.739 | 0.826 | 1.741 | 1.007 | 1.222 | 0.799 | 0.549 | 1.257 | 0.601 | 0.667 | 1.128 | 0.791 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2545
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-Not_Clustered
|
0.898
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKKASKNDGGQKKEKL,KRNEKIIDEMLKNKKV,PKSKIEKPFNMPKTIIAKPNDVPKQKNAKKKASKNDGGQKKEK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.536
|
0.169
|
0.020
|
0.559
|
0.094
|
0.117
|
0.103
|
0.012
|
0.170
|
0.118
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003210
|
1.000
|
2.000
|
Hsc_gene_25073.t1;Hsc_gene_25076.t1
|
— | — | — |
KAI3418172.1 hypothetical protein GPALN_010388 [Globodera pallida]
|
CAI2360025
|
0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR003323+232-398_239-353+|IPR038765+234-396+
|
— |
PF02338+239-353+OTU-like_cysteine_protease
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
44-228
|
2.000
|
1-43;229-409
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.912
|
46508.420
|
9.482
|
13.000
|
28.851
|
11.002
|
56.235
|
43.765
|
16.626
|
12.225
|
49.389
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
141.467
|
0.627
|
30.142
|
51.139
|
4.920
|
0.627
|
1.623
|
3.623
|
438.725
|
255.113
|
333.804
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.358
|
6.217
|
0.872
|
-3.431
|
-2.952
|
— | — | — | — | — |
-5.603
|
— | — |
No JSON data available for plots.