Hg_chrom2_TN10mRNA_2677
Organism: Heterodera glycines Gene Locus: chr2:1981632-1989860 Feature type: polypeptideProtein Sequence
Length: 320
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.472 | 1.381 | 1.364 | 0.216 | 0.833 | 0.962 | 0.521 | 1.875 | 2.708 | 0.76 | 0.852 | 0.735 | 1.302 | 0.721 | 0.957 | 1.295 | 1.281 | 0.9 | 0.962 | 0.919 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2548
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.106
|
— | — |
0.078
|
0.130
|
0.002
|
0.171
|
0.378
|
0.110
|
0.829
|
0.016
|
0.114
|
0.495
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000775
|
2.000
|
4.000
|
Hsc_gene_5167.t1;Hsc_gene_9195.t1;Hsc_gene_9196.t2;Hsc_gene_9257.t2
|
Hsc_gene_9195.t1;Hsc_gene_9196.t3
|
— | — |
WP_052435921.1 class I SAM-dependent methyltransferase [Neochlamydia sp. EPS4]
|
PYK59094
|
0.520
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008757
|
GO:0005575_0.871|GO:0110165_0.871|GO:0016020_0.810|GO:0005622_0.793|GO:0005737_0.763|GO:0071944_0.715|GO:0005886_0.691|GO:0005829_0.591
|
IPR013216+165-240+|IPR029063+129-309_145-305+
|
— |
PF08241+165-240+Methyltransferase_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-320
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.579
|
36437.130
|
6.366
|
-1.000
|
26.562
|
12.812
|
53.125
|
46.875
|
14.062
|
12.500
|
49.062
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
113.673
|
55.004
|
13.440
|
9.676
|
4.686
|
18.090
|
9.126
|
15.408
|
0.000
|
450.285
|
257.306
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.269
|
-2.646
|
— |
-1.074
|
1.961
|
-0.981
|
— | — |
-9.630
|
— |
-6.508
|
— | — |
No JSON data available for plots.