Hg_chrom2_TN10mRNA_2678
Organism: Heterodera glycines Gene Locus: chr2:2011356-2012919 Feature type: polypeptideProtein Sequence
Length: 210
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.554 | 2.547 | 2.078 | 1.149 | 1.746 | 1.465 | 0.227 | 1.19 | 1.164 | 1.223 | 0.794 | 1.12 | 0.794 | 0.366 | 0.389 | 2.041 | 0.546 | 0.361 | 0.733 | 0.0 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2549
|
— | — |
1.333
|
1.000
|
1.000
|
2.000
|
1.000
|
3.000
|
2.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — |
1-20
|
0.979
|
0.999
|
0.000
|
0.000
|
0.627
|
0.474
|
0.004
|
0.738
|
0.225
|
0.155
|
0.100
|
0.080
|
0.091
|
0.015
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001120
|
3.000
|
2.000
|
Hsc_gene_25070.t1;Hsc_gene_25070.t2
|
Hsc_gene_25070.t2
|
— |
Q6ZSG1.1 E3 ubiquitin-protein ligase ARK2C [Homo sapiens]
|
KAG6607243.1 RING-H2 finger protein ATL52, partial [Cucurbita argyrosperma subsp. sororia]
|
CAJ2655435
|
0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.821|GO:0005575_0.664|GO:0110165_0.661|GO:0009987_0.612|GO:0005622_0.608|GO:0065007_0.552|GO:0050789_0.551|GO:0016020_0.530|GO:0008152_0.520|GO:0043170_0.520|GO:0050794_0.510|GO:0043226_0.501
|
IPR001841+58-103_59-102_59-103+|IPR013083+42-120+
|
SM00184+59-102+
|
PF13639+58-103+Ring_finger_domain
|
— |
PTHR46539+49-199+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
104-210
|
1.000
|
1-103
|
7r71_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.937
|
23543.230
|
3.893
|
-28.500
|
31.429
|
6.190
|
65.714
|
34.286
|
9.524
|
21.905
|
54.286
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
88.922
|
0.000
|
5.904
|
18.458
|
5.963
|
0.000
|
0.605
|
0.280
|
61.543
|
331.173
|
215.617
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.902
|
8.634
|
1.756
|
-1.649
|
-6.419
|
— | — | — | — | — | — | — | — |