Hg_chrom2_TN10mRNA_2680
Organism: Heterodera glycines Gene Locus: chr2:2018516-2019992 Feature type: polypeptideProtein Sequence
Length: 195
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.537 | 2.743 | 2.145 | 1.061 | 1.966 | 1.446 | 0.244 | 1.282 | 1.026 | 1.247 | 0.777 | 0.603 | 0.57 | 0.394 | 0.419 | 2.125 | 0.588 | 0.233 | 0.394 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2550
|
— | — |
1.333
|
1.000
|
1.000
|
2.000
|
1.000
|
3.000
|
2.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-Not_Clustered
|
0.810
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.573
|
0.457
|
0.008
|
0.738
|
0.253
|
0.109
|
0.075
|
0.045
|
0.089
|
0.035
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001120
|
3.000
|
2.000
|
Hsc_gene_25070.t1;Hsc_gene_25070.t2
|
— | — |
Q6ZSG1.1 E3 ubiquitin-protein ligase ARK2C [Homo sapiens]
|
KAJ0538833.1 putative transcription factor C2H2 family [Helianthus annuus];KAJ0553450.1 putative transcription factor C2H2 family [Helianthus annuus]
|
XP_031371652
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— |
GO:0008150_0.821|GO:0005575_0.661|GO:0110165_0.656|GO:0005622_0.622|GO:0009987_0.613|GO:0065007_0.522|GO:0016020_0.517|GO:0050789_0.517|GO:0043226_0.505
|
IPR001841+42-87_43-86_43-87+|IPR013083+26-104+
|
SM00184+43-86+
|
PF13639+42-87+Ring_finger_domain
|
— |
PTHR46539+35-185+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-48;88-195
|
1.000
|
49-87
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.953
|
21758.960
|
3.859
|
-29.500
|
33.333
|
5.128
|
69.231
|
30.769
|
9.744
|
23.590
|
55.385
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
skyblue3
|
112.900
|
1.066
|
12.607
|
19.411
|
4.963
|
0.758
|
0.202
|
0.000
|
385.297
|
190.336
|
273.891
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.329
|
4.046
|
0.736
|
-2.000
|
-2.701
|
— | — | — | — |
-4.180
|
-4.859
|
— | — |
No JSON data available for plots.