Hg_chrom2_TN10mRNA_2687
Organism: Heterodera glycines Gene Locus: chr2:2081318-2083113 Feature type: polypeptideProtein Sequence
Length: 350
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.631 | 1.794 | 0.26 | 0.493 | 0.524 | 0.952 | 0.714 | 1.286 | 2.984 | 1.892 | 0.693 | 1.008 | 2.302 | 0.934 | 0.816 | 0.735 | 0.749 | 0.606 | 0.879 | 0.84 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2557
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
49-69
|
0.984
|
— | — | — | — |
0.000
|
— | — |
0.155
|
0.085
|
0.069
|
0.117
|
0.368
|
0.135
|
0.120
|
0.053
|
0.740
|
0.033
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003212
|
2.000
|
1.000
|
Hsc_gene_25068.t1
|
Hsc_gene_23489.t1;Hsc_gene_23490.t1
|
— |
Q09344.4 Serpentine receptor class alpha/beta-14 [Caenorhabditis elegans]
|
KAI1709102.1 sre G protein-coupled chemoreceptor domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007606|GO:0016020
|
— |
IPR004151+88-290+|IPR052854+16-345+
|
— |
PF03125+88-290+Sre_G_protein-coupled_chemoreceptor
|
— |
PTHR47518+16-345+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-350
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.843
|
39815.310
|
10.136
|
18.500
|
15.714
|
14.857
|
36.857
|
63.143
|
11.143
|
4.571
|
40.571
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
11.237
|
0.526
|
2.899
|
1.726
|
0.816
|
0.612
|
0.911
|
2.604
|
4.146
|
42.265
|
25.928
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — |
-5.106
|
— | — |
No JSON data available for plots.