Hg_chrom2_TN10mRNA_2690
Organism: Heterodera glycines Gene Locus: chr2:2099896-2101286 Feature type: polypeptideProtein Sequence
Length: 214
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.978 | 0.652 | 0.85 | 0.322 | 1.402 | 1.917 | 0.223 | 0.234 | 1.661 | 1.642 | 1.345 | 1.374 | 1.428 | 1.078 | 0.954 | 0.601 | 1.072 | 0.425 | 0.719 | 1.237 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2560
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
chloroplast
|
— | — | — |
5-26
|
0.966
|
1-23
|
0.885
|
0.997
|
0.000
|
0.000
|
0.563
|
0.252
|
0.030
|
0.397
|
0.088
|
0.080
|
0.097
|
0.012
|
0.064
|
0.355
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003213
|
2.000
|
1.000
|
Hsc_gene_25061.t1
|
Hsc_gene_23488.t1;Hsc_gene_23488.t2;Hsc_gene_25061.t1;Hsc_gene_730.t1
|
— | — |
CAB75701.1 putative hypodermis secreted protein [Globodera rostochiensis]
|
HZZ88776
|
0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
205-214
|
1.000
|
1-204
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.553
|
24903.900
|
7.793
|
1.500
|
27.103
|
10.748
|
48.131
|
51.869
|
14.019
|
13.084
|
37.850
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
62.879
|
4.336
|
151.621
|
42.228
|
7.615
|
3.992
|
2.937
|
117.072
|
4.366
|
148.144
|
86.525
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.892
|
3.142
|
-1.735
|
-2.514
|
— | — |
4.777
|
-5.176
|
— | — | — | — | — |