SCN Proteipedia

Hg_chrom2_TN10mRNA_2697

Organism: Heterodera glycines Gene Locus: chr2:2174476-2187761 Feature type: polypeptide

Protein Sequence

Length: 2,061 (Signal peptide: 1-33)

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.858	1.467	0.988	2.51	1.059	1.605	0.918	1.965	0.744	0.984	0.706	1.056	1.146	0.914	0.901	0.915	0.795	0.735	0.634	0.599	0.0

Composition

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_2566	—	—	1.111	1.000	1.000	1.000	1.000	2.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	16-Not_Clustered	0.401

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	secreted	signal_peptide\|transmembrane_domain	cell_membrane	chloroplast	—	—	—	12-34	0.981	1-33	0.863	0.999	0.000	0.000	0.270	0.053	0.019	0.276	0.152	0.547	0.351	0.052	0.702	0.091

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001792	2.000	2.000	Hsc_gene_25056.t1;Hsc_gene_25056.t2	Hsc_gene_17201.t1;Hsc_gene_17201.t2;Hsc_gene_25056.t1;Hsc_gene_25056.t2;Hsc_gene_25060.t1;Hsc_gene_728.t1;Hsc_gene_780.t1;Hsc_gene_781.t1	—	P14585.1 Protein lin-12 [Caenorhabditis elegans]	KAI1716459.1 EGF-like domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005509\|GO:0005515	GO:0008150_0.900\|GO:0005575_0.819\|GO:0110165_0.819\|GO:0009987_0.810\|GO:0050789_0.796\|GO:0065007_0.796\|GO:0050794_0.789\|GO:0032502_0.727\|GO:0048856_0.727\|GO:0016020_0.722\|GO:0005622_0.706\|GO:0032501_0.681\|GO:0071944_0.675\|GO:0003674_0.658\|GO:0050896_0.634\|GO:0005886_0.624\|GO:0043226_0.616\|GO:0007275_0.606\|GO:0048518_0.594\|GO:0005488_0.589\|GO:0043227_0.584\|GO:0048522_0.583\|GO:0030154_0.556\|GO:0048869_0.556\|GO:0048731_0.554\|GO:0008152_0.553\|GO:0019222_0.553\|GO:0048513_0.549\|GO:0051716_0.546\|GO:0007154_0.540\|GO:0043170_0.540\|GO:0060255_0.540\|GO:0023052_0.534\|GO:0005515_0.528\|GO:0043229_0.525\|GO:0031323_0.523\|GO:0044237_0.523\|GO:0007165_0.520\|GO:0043231_0.512	IPR000152+236-247_390-401_428-439_507-518_546-557_838-849+\|IPR000742+61-96_96-134_99-134_105-131_122-133_140-179_142-179_167-178_180-217_183-217_205-216_219-257_222-257_245-256_262-314_265-314_302-313_316-370_319-370_358-369_372-411_375-411_399-410_413-449_416-449_437-448_450-489_453-489_477-488_491-528_494-528_516-527_530-567_533-567_534-565_555-566_573-607_576-607_595-606_610-645_613-645_647-685_650-685_673-684_695-740_698-740_728-739_744-780_747-780_768-779_782-821_785-821_786-819_809-820_823-859_826-859_847-858+\|IPR000800+871-909_876-909_878-915_896-909_912-951_917-950_919-962_938-950_952-990_956-989_977-989+\|IPR001881+100-134_180-217_219-257_372-411_413-449_452-489_491-528_530-567_573-607_784-821_823-859+\|IPR002110+1455-1493_1480-1552_1531-1560_1592-1625_1630-1699_1640-1669_1640-1672_1673-1702_1673-1705+\|IPR009030+142-258_400-534+\|IPR013032+422-441_581-599_832-853+\|IPR018097+219-245_372-399_491-516_823-847+\|IPR035993+877-909_919-950_958-989+\|IPR036770+1438-1719_1448-1705+\|IPR049883+219-252_372-406_491-523+\|IPR051830+219-607+	SM00004+871-909_912-951_952-990+\|SM00179+100-134_180-217_219-257_372-411_413-449_452-489_491-528_530-567_573-607_784-821_823-859+\|SM00181+61-96_99-134_140-179_183-217_222-257_265-314_319-370_375-411_416-449_453-489_494-528_533-567_576-607_613-645_650-685_698-740_747-780_785-821_826-859+\|SM00248+1455-1493_1531-1560_1592-1625_1640-1669_1673-1702+	PF00008+105-131_534-565_786-819+EGF-like_domain\|PF00066+876-909_917-950_956-989+LNR_domain\|PF07645+219-252_372-406_491-523+Calcium-binding_EGF_domain\|PF12661+422-441_581-599_832-853+Human_growth_factor-like_EGF\|PF12796+1480-1552_1630-1699+Ankyrin_repeats_(3_copies)	G3DSA:2.10.25.10:FF:000125+219-259_372-413+Neurogenic_locus_notch_protein-like\|G3DSA:2.10.25.10:FF:000294+531-569+Delta-like_protein\|G3DSA:2.10.25.10:FF:000472+804-863+Uncharacterized_protein,_isoform_A\|G3DSA:3.30.300.320:FF:000001+874-994+Neurogenic_locus_notch_1	PTHR24033+219-607+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-1;1314-1433;1739-2061	2.000	2-1313;1434-1738	5uk5_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.618	227357.270	6.173	-15.500	24.794	10.917	48.617	51.383	13.003	11.790	54.973

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	turquoise	625.504	581.139	500.516	572.545	615.988	611.783	796.345	732.483	130.359	984.759	618.587

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.445	-0.159	0.303	—	—	0.391	—	0.264	—	—	—	—	—

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