Hg_chrom2_TN10mRNA_2705
Organism: Heterodera glycines Gene Locus: chr2:2274309-2275283 Feature type: polypeptideProtein Sequence
Length: 91
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.894 | 2.3 | 0.599 | 1.516 | 1.282 | 0.564 | 1.177 | 1.648 | 0.244 | 1.04 | 1.499 | 0.646 | 2.137 | 0.211 | 1.346 | 0.628 | 0.54 | 0.833 | 1.691 | 0.323 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2574
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-21
|
0.998
|
1.000
|
0.000
|
0.000
|
0.497
|
0.256
|
0.139
|
0.206
|
0.159
|
0.047
|
0.050
|
0.020
|
0.148
|
0.901
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006635
|
1.000
|
1.000
|
Hsc_gene_20699.t1
|
— | — | — |
XP_058967263.2 carboxypeptidase inhibitor SmCI [Pocillopora verrucosa]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004867
|
GO:0008150_0.740|GO:0005575_0.734|GO:0110165_0.727|GO:0003674_0.616
|
IPR002223+37-90_38-89_39-89+|IPR036880+29-91_34-90+|IPR050098+26-91+
|
SM00131+37-90+
|
PF00014+38-89+Kunitz/Bovine_pancreatic_trypsin_inhibitor_domain
|
— |
PTHR10083+26-91+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-91
|
2kcr_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.812
|
10322.690
|
9.374
|
6.500
|
30.769
|
14.286
|
50.549
|
49.451
|
19.780
|
10.989
|
49.451
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
skyblue
|
664.125
|
3.220
|
14.274
|
8.543
|
4.393
|
29.609
|
7343.420
|
52.315
|
4.146
|
106.524
|
62.648
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.920
|
1.271
|
— | — |
2.762
|
7.970
|
— |
7.283
|
— | — | — | — | — |