Hg_chrom2_TN10mRNA_2706
Organism: Heterodera glycines Gene Locus: chr2:2278656-2281984 Feature type: polypeptideProtein Sequence
Length: 183
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.398 | 1.779 | 1.093 | 0.754 | 0.729 | 0.701 | 0.781 | 1.093 | 1.093 | 0.886 | 1.076 | 1.929 | 0.911 | 1.366 | 0.558 | 0.625 | 0.627 | 1.242 | 1.681 | 0.804 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2575
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.260
|
0.491
|
0.220
|
0.476
|
0.092
|
0.027
|
0.081
|
0.022
|
0.138
|
0.610
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001697
|
3.000
|
1.000
|
Hsc_gene_4456.t1
|
— | — |
O16264.1 Phosphatidylethanolamine-binding protein homolog F40A3.3 [Caenorhabditis elegans]
|
XP_020301448.1 OV-16 antigen [Loa loa];EFO16783.2 OV-16 antigen [Loa loa]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.707|GO:0110165_0.687|GO:0008150_0.686|GO:0005622_0.553|GO:0016020_0.535|GO:0043226_0.513|GO:0005737_0.508
|
IPR008914+85-160+|IPR035810+41-151_61-179+|IPR036610+37-183_43-182+
|
— |
PF01161+85-160+Phosphatidylethanolamine-binding_protein
|
— |
PTHR11362+41-151+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-183
|
5tvd_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.769
|
19972.860
|
6.845
|
1.000
|
22.404
|
10.383
|
40.984
|
59.016
|
12.022
|
10.383
|
57.923
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkgreen
|
1506.386
|
93.758
|
1084.693
|
133.469
|
19.997
|
5.016
|
16.867
|
27.766
|
6886.855
|
907.208
|
3469.914
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.303
|
0.372
|
-2.914
|
-2.772
|
-1.980
|
1.762
|
2.391
|
— | — |
-5.538
|
— | — | — |
No JSON data available for plots.