Hg_chrom2_TN10mRNA_2709
Organism: Heterodera glycines Gene Locus: chr2:2297615-2304892 Feature type: polypeptideProtein Sequence
Length: 522
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.646 | 0.846 | 1.01 | 0.661 | 0.766 | 1.13 | 0.433 | 0.958 | 1.405 | 1.683 | 0.813 | 1.803 | 1.809 | 0.884 | 1.212 | 1.04 | 0.942 | 0.958 | 1.621 | 0.902 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2578
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
nucleus
|
RRRAVDRTSERAKLR,KRLFDDLMISYNRHRRP
|
— | — | — | — |
1-22
|
0.885
|
0.992
|
4.000
|
4.000
|
0.050
|
0.056
|
0.012
|
0.159
|
0.266
|
0.160
|
0.277
|
0.016
|
0.806
|
0.024
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006636
|
1.000
|
1.000
|
Hsc_gene_20705.t1
|
Hsc_gene_20705.t1;Hsc_gene_20706.t1
|
— |
Q23022.1 Acetylcholine receptor subunit alpha-type unc-38 [Caenorhabditis elegans]
|
KAI1715373.1 neurotransmitter-gated ion-channel ligand binding domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004888|GO:0005216|GO:0005230|GO:0006811|GO:0016020|GO:0022848|GO:0034220|GO:0045211
|
GO:0005575_0.935|GO:0110165_0.932|GO:0071944_0.875|GO:0016020_0.870|GO:0008150_0.868|GO:0005886_0.858|GO:0009987_0.848|GO:0065007_0.784|GO:0006810_0.764|GO:0051179_0.764|GO:0051234_0.764|GO:0050789_0.754|GO:0055085_0.731|GO:0023052_0.728|GO:0007154_0.725|GO:0003674_0.703|GO:0050896_0.689|GO:0006811_0.683|GO:0034220_0.682|GO:0007267_0.658|GO:0030054_0.658|GO:0045202_0.658|GO:0098916_0.658|GO:0099536_0.658|GO:0099537_0.658|GO:0050794_0.641|GO:0007268_0.640|GO:0005215_0.637|GO:0022857_0.637|GO:0051716_0.612|GO:0022803_0.609|GO:0005216_0.604|GO:0015075_0.604|GO:0015267_0.604|GO:0006812_0.602|GO:0098655_0.602|GO:0060089_0.586|GO:0032501_0.581|GO:0007165_0.577|GO:0038023_0.577|GO:0022836_0.561|GO:0003008_0.547|GO:0098590_0.545|GO:0008324_0.525|GO:0065008_0.525|GO:0015276_0.515|GO:0022834_0.515
|
IPR002394+62-78_96-110_114-126_132-150+|IPR006029+265-502+|IPR006201+19-503_32-416_75-91_108-119_152-166_252-264+|IPR006202+29-258+|IPR018000+152-166+|IPR036719+258-512+|IPR036734+19-263_27-258+|IPR038050+264-379_440-520+
|
— |
PF02931+29-258+Neurotransmitter-gated_ion-channel_ligand_binding_domain|PF02932+265-502+Neurotransmitter-gated_ion-channel_transmembrane_region
|
G3DSA:1.20.58.390:FF:000001+264-377+Neuronal_nicotinic_acetylcholine_receptor_subunit_3|G3DSA:2.70.170.10:FF:000044+20-263+AcetylCholine_Receptor
|
PTHR18945+32-416+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-522
|
8st4_E
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.667
|
60344.260
|
8.453
|
11.000
|
23.372
|
13.602
|
44.444
|
55.556
|
13.218
|
10.153
|
44.253
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
309.276
|
167.143
|
328.259
|
122.353
|
107.123
|
185.632
|
101.574
|
340.197
|
230.070
|
673.425
|
483.416
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.743
|
-0.587
|
-1.314
|
— |
0.808
|
-0.864
|
0.769
|
-1.604
|
— | — | — | — | — |