Hg_chrom2_TN10mRNA_2710
Organism: Heterodera glycines Gene Locus: chr2:2306575-2311900 Feature type: polypeptideProtein Sequence
Length: 573
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.319 | 1.786 | 0.476 | 0.602 | 0.553 | 3.356 | 0.332 | 2.967 | 0.582 | 1.038 | 0.529 | 2.258 | 0.727 | 1.51 | 0.57 | 1.471 | 1.116 | 0.344 | 0.403 | 0.205 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2579
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RPRR,KRPMNAFMVWSRGKRKRIA,KRLRQLHLLQHPNYKYRPR
|
— | — |
1-35
|
0.997
|
— | — |
0.000
|
— | — |
0.894
|
0.260
|
0.006
|
0.287
|
0.050
|
0.034
|
0.057
|
0.023
|
0.043
|
0.072
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006637
|
1.000
|
1.000
|
Hsc_gene_20707.t1
|
— | — |
P55863.1 Transcription factor Sox-3-A [Xenopus laevis]
|
QES69166.1 dichaete [Agasicles hygrophila]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— |
GO:0008150_0.921|GO:0032502_0.831|GO:0048856_0.810|GO:0032501_0.803|GO:0007275_0.756|GO:0009987_0.726|GO:0005575_0.690|GO:0065007_0.649|GO:0050789_0.648|GO:0050794_0.644|GO:0003674_0.642|GO:0005488_0.642|GO:0048731_0.633|GO:0003676_0.603|GO:0003677_0.603|GO:0043565_0.603|GO:0097159_0.603|GO:0110165_0.596|GO:0007399_0.587|GO:0005622_0.556|GO:0008152_0.551|GO:0019222_0.551|GO:0044238_0.551|GO:0080090_0.551|GO:0031323_0.549|GO:0044237_0.549|GO:0043170_0.543|GO:0060255_0.543|GO:0009058_0.534|GO:0009059_0.534|GO:0009889_0.534|GO:0010467_0.534|GO:0010468_0.534|GO:0010556_0.534|GO:0031326_0.534|GO:0044249_0.534|GO:0006139_0.531|GO:0016070_0.531|GO:0019219_0.531|GO:0051252_0.531|GO:0090304_0.531|GO:0043226_0.526|GO:0006351_0.524|GO:0032774_0.524|GO:0034654_0.524|GO:0141187_0.524|GO:2001141_0.522|GO:0006355_0.520|GO:0030154_0.518|GO:0048869_0.518|GO:0043229_0.516
|
IPR009071+248-318_249-317+|IPR036910+240-321_245-324+|IPR050140+217-525+
|
SM00398+248-318+
|
PF00505+249-317+HMG_(high_mobility_group)_box
|
G3DSA:1.10.30.10:FF:000002+247-324+transcription_factor_Sox-2
|
PTHR10270+217-525+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-573
|
0.000
|
— |
6wx9_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.879
|
62838.850
|
7.975
|
19.000
|
18.150
|
9.773
|
56.021
|
43.979
|
12.216
|
5.934
|
53.403
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
red
|
1158.754
|
1919.072
|
736.565
|
541.816
|
444.532
|
681.387
|
561.996
|
806.772
|
243.665
|
2752.247
|
1677.141
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.612
|
-1.962
|
-0.334
|
-0.318
|
0.631
|
-0.269
|
— | — | — | — | — | — | — |
No JSON data available for plots.