Hg_chrom2_TN10mRNA_2711
Organism: Heterodera glycines Gene Locus: chr2:2341093-2342328 Feature type: polypeptideProtein Sequence
Length: 304
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.262 | 0.382 | 0.538 | 0.34 | 1.206 | 1.518 | 0.235 | 0.658 | 0.804 | 1.022 | 0.548 | 1.741 | 2.01 | 2.594 | 0.738 | 0.611 | 1.294 | 1.396 | 0.506 | 0.871 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2580
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.258
|
0.194
|
0.032
|
0.251
|
0.828
|
0.407
|
0.482
|
0.025
|
0.186
|
0.160
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000776
|
5.000
|
1.000
|
Hsc_gene_18024.t1
|
Hsc_gene_18024.t1;Hsc_gene_19598.t1;Hsc_gene_2306.t1
|
— | — |
KAI3420952.1 Receptor expression-enhancing protein 5 [Globodera pallida]
|
No
|
0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.846|GO:0005575_0.738|GO:0110165_0.738|GO:0071944_0.675|GO:0016020_0.667|GO:0005886_0.666|GO:0005622_0.577|GO:0009987_0.553|GO:0043226_0.536|GO:0005737_0.535|GO:0050896_0.518|GO:0043229_0.516|GO:0005773_0.506|GO:0043227_0.506|GO:0043231_0.506
|
IPR004345+222-302_223-295+
|
— |
PF03134+223-295+TB2/DP1,_HVA22_family
|
— |
PTHR12300+222-302+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
47-163
|
2.000
|
1-46;164-304
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.540
|
33868.180
|
4.763
|
-7.000
|
18.750
|
12.171
|
38.487
|
61.513
|
8.553
|
10.197
|
53.289
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
314.002
|
10.546
|
3.347
|
23.085
|
69.209
|
1320.189
|
17.548
|
1141.850
|
0.514
|
403.707
|
230.910
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.888
|
0.992
|
2.895
|
1.554
|
4.266
|
-6.224
|
— |
-5.878
|
-8.955
|
4.902
|
— | — | — |
No JSON data available for plots.