Hg_chrom2_TN10mRNA_2724
Organism: Heterodera glycines Gene Locus: chr2:2421439-2424060 Feature type: polypeptideProtein Sequence
Length: 346
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.706 | 0.807 | 0.315 | 0.797 | 0.482 | 0.815 | 0.654 | 1.734 | 2.697 | 1.836 | 0.744 | 1.02 | 2.007 | 0.834 | 1.121 | 0.991 | 0.948 | 0.613 | 1.556 | 0.935 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2593
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-Not_Clustered
|
0.553
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
28-48
|
0.987
|
— | — | — | — |
0.000
|
— | — |
0.149
|
0.104
|
0.050
|
0.109
|
0.297
|
0.111
|
0.098
|
0.046
|
0.737
|
0.038
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000525
|
5.000
|
2.000
|
Hsc_gene_17339.t1;Hsc_gene_25071.t1
|
Hsc_gene_6099.t1
|
— |
Q09344.4 Serpentine receptor class alpha/beta-14 [Caenorhabditis elegans]
|
KAI3416251.1 hypothetical protein GPALN_005796 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007606|GO:0016020
|
— |
IPR004151+84-275+|IPR052860+4-275+
|
— |
PF03125+84-275+Sre_G_protein-coupled_chemoreceptor
|
— |
PTHR47521+4-275+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-346
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.643
|
39565.120
|
10.313
|
26.000
|
18.497
|
15.896
|
37.861
|
62.139
|
13.873
|
4.624
|
40.173
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
142.049
|
4.245
|
20.567
|
9.811
|
2.631
|
2.776
|
8.816
|
2.744
|
1.028
|
601.349
|
344.069
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.055
|
1.075
|
-0.962
|
-1.928
|
— |
1.673
|
— |
1.816
|
-7.216
|
— | — | — | — |
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