Hg_chrom2_TN10mRNA_2725
Organism: Heterodera glycines Gene Locus: chr2:2428636-2431276 Feature type: polypeptideProtein Sequence
Length: 347
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.603 | 1.072 | 0.891 | 1.192 | 1.105 | 0.961 | 0.892 | 1.297 | 1.921 | 0.779 | 1.31 | 1.017 | 1.121 | 0.942 | 0.471 | 1.276 | 0.945 | 0.917 | 1.108 | 0.932 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2594
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-21
|
0.879
|
1.000
|
0.000
|
0.000
|
0.145
|
0.323
|
0.050
|
0.318
|
0.264
|
0.095
|
0.202
|
0.010
|
0.223
|
0.877
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000526
|
1.000
|
6.000
|
Hsc_gene_21489.t1;Hsc_gene_21769.t1;Hsc_gene_26628.t1;Hsc_gene_26628.t2;Hsc_gene_26628.t3;Hsc_gene_6097.t1
|
Hsc_gene_6097.t1
|
— |
Q9UBX7.2 Kallikrein-11 [Homo sapiens]
|
CAA74206.1 serine proteinase [Heterodera glycines]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004252|GO:0006508
|
GO:0005575_0.730|GO:0110165_0.730|GO:0008150_0.718|GO:0003674_0.685|GO:0003824_0.539|GO:0016787_0.508
|
IPR001254+51-334_52-339_55-316_60-315+|IPR009003+51-311+|IPR018114+87-92+|IPR043504+43-182_185-323+|IPR051487+50-336+
|
SM00020+51-334+
|
PF00089+60-315+Trypsin
|
— |
PTHR24256+50-336+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-347
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.774
|
38450.860
|
6.921
|
2.500
|
25.072
|
11.239
|
48.127
|
51.873
|
13.545
|
11.527
|
51.297
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
skyblue
|
769.062
|
8.401
|
16.454
|
9.190
|
3.256
|
5799.741
|
1945.445
|
64.363
|
14.141
|
411.473
|
241.188
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
-1.520
|
10.795
|
-1.566
|
-6.620
|
5.067
|
— | — | — | — |
8.247
|