Hg_chrom2_TN10mRNA_2728
Organism: Heterodera glycines Gene Locus: chr2:2468747-2478859 Feature type: polypeptideProtein Sequence
Length: 887
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.747 | 1.101 | 0.881 | 0.467 | 1.127 | 1.012 | 0.725 | 1.917 | 1.578 | 1.173 | 0.769 | 2.188 | 2.192 | 0.65 | 0.966 | 0.773 | 0.647 | 1.162 | 1.214 | 0.829 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2597
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.840
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.043
|
0.118
|
0.026
|
0.219
|
0.602
|
0.601
|
0.290
|
0.002
|
0.552
|
0.019
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001794
|
3.000
|
1.000
|
Hsc_gene_6077.t1
|
Hsc_gene_6077.t1
|
— |
G5EEK9.1 V-type proton ATPase 116 kDa subunit a 2 [Caenorhabditis elegans]
|
KAI6222495.1 V-type proton ATPase subunit a [Aphelenchoides fujianensis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000220|GO:0033179|GO:0046961|GO:1902600
|
GO:0005575_0.917|GO:0110165_0.917|GO:0016020_0.887|GO:0008150_0.879|GO:0005622_0.827|GO:0009987_0.793|GO:0043226_0.783|GO:0005737_0.777|GO:0043229_0.764|GO:0043227_0.759|GO:0071944_0.753|GO:0005886_0.750|GO:0043231_0.738|GO:0005773_0.709|GO:0051179_0.602|GO:0006810_0.600|GO:0051234_0.600|GO:0031090_0.578|GO:0012505_0.539|GO:0098588_0.530|GO:0003674_0.516
|
IPR002490+3-881_28-874+|IPR026028+1-885+
|
— |
PF01496+28-874+V-type_ATPase_116kDa_subunit_family
|
— |
PTHR11629+3-881+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-887
|
5i1m_V
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.521
|
101884.520
|
6.554
|
1.000
|
25.254
|
16.122
|
43.292
|
56.708
|
13.641
|
11.612
|
43.856
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
2221.940
|
287.475
|
2322.048
|
1909.823
|
2142.554
|
1414.041
|
1341.771
|
2968.433
|
326.371
|
4831.404
|
2900.676
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.786
|
2.595
|
-0.175
|
0.134
|
-0.585
|
— |
0.968
|
-1.006
|
-3.994
|
— | — | — | — |
No JSON data available for plots.