Hg_chrom2_TN10mRNA_2749
Organism: Heterodera glycines Gene Locus: chr2:2594751-2597221 Feature type: polypeptideProtein Sequence
Length: 309
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.753 | 1.58 | 0.883 | 1.116 | 0.809 | 1.245 | 0.809 | 1.78 | 2.014 | 0.918 | 1.226 | 1.713 | 0.629 | 0.934 | 0.396 | 1.156 | 0.584 | 1.128 | 0.747 | 0.761 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2618
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
— |
extracellular
|
— | — | — | — | — | — | — |
0.632
|
0.202
|
1.000
|
— |
0.277
|
0.559
|
0.037
|
0.405
|
0.137
|
0.080
|
0.116
|
0.083
|
0.129
|
0.797
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001795
|
1.000
|
3.000
|
Hsc_gene_6060.t1;Hsc_gene_6060.t2;Hsc_gene_6060.t3
|
— | — |
Q9UBX7.2 Kallikrein-11 [Homo sapiens]
|
AGZ15719.1 serine proteinase-l, partial [Heterodera avenae]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004252|GO:0006508
|
GO:0005575_0.789|GO:0110165_0.785|GO:0008150_0.673|GO:0003674_0.600
|
IPR001254+43-287_53-298_57-283_58-282+|IPR001314+76-91_149-163_258-270+|IPR009003+58-285+|IPR043504+48-167_168-293+|IPR051333+19-287+
|
SM00020+53-298+
|
PF00089+58-282+Trypsin
|
— |
PTHR24260+19-287+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-309
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.834
|
33946.040
|
7.621
|
6.500
|
23.301
|
9.385
|
46.602
|
53.398
|
13.592
|
9.709
|
52.104
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
blue
|
278.927
|
8.999
|
6.362
|
2.518
|
2.705
|
437.525
|
96.280
|
3.039
|
13.899
|
1000.844
|
577.868
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.977
|
-1.234
|
— |
7.374
|
-2.174
|
-7.283
|
5.131
|
-6.276
|
— |
-7.965
|
— | — |