Hg_chrom2_TN10mRNA_2750
Organism: Heterodera glycines Gene Locus: chr2:2598367-2600520 Feature type: polypeptideProtein Sequence
Length: 348
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.568 | 2.072 | 0.731 | 0.991 | 0.862 | 0.737 | 0.821 | 1.006 | 1.724 | 1.048 | 1.045 | 1.69 | 1.437 | 0.995 | 0.235 | 1.273 | 1.131 | 0.914 | 1.105 | 0.676 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2619
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-22
|
0.912
|
0.889
|
0.000
|
0.000
|
0.169
|
0.306
|
0.087
|
0.365
|
0.185
|
0.108
|
0.190
|
0.056
|
0.197
|
0.900
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000779
|
1.000
|
5.000
|
Hsc_gene_24499.t1;Hsc_gene_24500.t1;Hsc_gene_24500.t2;Hsc_gene_6057.t1;Hsc_gene_6062.t1
|
— | — |
A0A1S4GMJ4.1 CLIP domain-containing serine protease C9 [Anopheles gambiae]
|
CAA74206.1 serine proteinase [Heterodera glycines]
|
No
|
-0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004252|GO:0006508
|
GO:0008150_0.784|GO:0005575_0.654|GO:0110165_0.648|GO:0003674_0.613
|
IPR001254+51-336_52-341_59-316+|IPR001314+78-93_149-163_281-293+|IPR009003+50-341+|IPR043504+47-340+|IPR051487+49-343+
|
SM00020+51-336+
|
PF00089+59-316+Trypsin
|
— |
PTHR24256+49-343+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-348
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.846
|
38305.770
|
6.374
|
-0.500
|
19.253
|
10.920
|
46.839
|
53.161
|
10.057
|
9.195
|
54.598
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
skyblue
|
795.096
|
3.969
|
12.221
|
5.089
|
3.308
|
7369.505
|
1789.418
|
68.140
|
2.764
|
7.105
|
5.245
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.390
|
— |
-1.150
|
— |
11.137
|
-2.038
|
-6.882
|
4.859
|
— | — | — | — | — |