Hg_chrom2_TN10mRNA_2752
Organism: Heterodera glycines Gene Locus: chr2:2609050-2615136 Feature type: polypeptideProtein Sequence
Length: 1,049
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.709 | 1.33 | 1.109 | 0.46 | 1.493 | 0.929 | 0.67 | 0.906 | 1.102 | 0.863 | 1.777 | 1.963 | 1.721 | 0.843 | 0.72 | 0.654 | 0.656 | 0.968 | 0.88 | 1.206 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2621
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
nucleus
|
RKDFTKVFASKKSKKE,KKHFKWLRKELREAKRRRV
|
— | — | — | — |
1-19
|
0.995
|
1.000
|
0.000
|
0.000
|
0.344
|
0.231
|
0.025
|
0.457
|
0.134
|
0.287
|
0.253
|
0.003
|
0.293
|
0.259
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003223
|
2.000
|
1.000
|
Hsc_gene_6065.t1
|
— | — | — |
KJH45909.1 Ser/Thr phosphatase family protein [Dictyocaulus viviparus]
|
No
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016787|GO:0046488|GO:0052742
|
GO:0005575_0.835|GO:0110165_0.833|GO:0008150_0.783|GO:0003674_0.695|GO:0005622_0.684|GO:0016020_0.682|GO:0009987_0.680|GO:0003824_0.575|GO:0005737_0.562|GO:0043226_0.535
|
IPR002498+496-882_532-840_591-799+|IPR004843+131-340+|IPR027483+682-893+|IPR027484+505-671+|IPR029052+113-447_132-394+|IPR051558+33-435+
|
SM00330+532-840+
|
PF00149+131-340+Calcineurin-like_phosphoesterase|PF01504+591-799+Phosphatidylinositol-4-phosphate_5-Kinase
|
— |
PTHR10161+33-435+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-1049
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.643
|
121155.550
|
7.748
|
11.500
|
32.126
|
13.251
|
50.048
|
49.952
|
17.064
|
15.062
|
44.233
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkgreen
|
5532.208
|
76.693
|
2444.084
|
2949.230
|
228.916
|
16.333
|
20.573
|
40.454
|
28179.328
|
902.806
|
12592.744
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.768
|
5.127
|
0.377
|
-3.719
|
-3.794
|
— | — | — |
4.873
|
-3.075
|
— | — |
-4.842
|