Hg_chrom2_TN10mRNA_2754
Organism: Heterodera glycines Gene Locus: chr2:2617936-2625381 Feature type: polypeptideProtein Sequence
Length: 1,024
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.761 | 1.295 | 1.278 | 0.505 | 1.367 | 0.901 | 0.686 | 0.977 | 1.128 | 0.95 | 1.687 | 1.781 | 1.736 | 0.732 | 0.698 | 0.6 | 0.704 | 0.991 | 0.901 | 1.178 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2623
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
nucleus
|
RKDFTKVFASKKSKKE,KKDTQKYAKMIEDAKRHFK,KRHFKWLRKELREAKRRRV
|
— | — | — | — |
1-19
|
0.995
|
1.000
|
0.000
|
0.000
|
0.328
|
0.248
|
0.029
|
0.512
|
0.133
|
0.265
|
0.284
|
0.005
|
0.246
|
0.310
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003223
|
2.000
|
1.000
|
Hsc_gene_6065.t1
|
— | — | — |
XP_038835141.1 tartrate-resistant acid phosphatase type 5a [Salvelinus namaycush]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016787|GO:0046488|GO:0052742
|
GO:0003674_0.799|GO:0008150_0.768|GO:0005575_0.765|GO:0110165_0.761|GO:0005622_0.723|GO:0003824_0.704|GO:0009987_0.622|GO:0016020_0.612|GO:0043226_0.544|GO:0043229_0.533|GO:0016740_0.520|GO:0005737_0.516
|
IPR002498+467-841_508-815_565-803+|IPR004843+131-336+|IPR027483+655-868+|IPR027484+473-645+|IPR029052+111-437_131-360+|IPR051558+33-431+
|
SM00330+508-815+
|
PF00149+131-336+Calcineurin-like_phosphoesterase|PF01504+565-803+Phosphatidylinositol-4-phosphate_5-Kinase
|
— |
PTHR10161+33-431+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-1024
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.543
|
117828.610
|
6.754
|
3.000
|
31.738
|
13.379
|
49.316
|
50.684
|
16.504
|
15.234
|
45.215
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
4666.924
|
95.736
|
2005.957
|
2242.910
|
202.641
|
43.800
|
25.572
|
53.770
|
19445.273
|
4082.444
|
10666.514
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.163
|
4.412
|
0.267
|
-3.500
|
-2.196
|
-0.764
|
— |
-0.933
|
2.152
|
-2.933
|
-3.842
|
— | — |