Hg_chrom2_TN10mRNA_2757
Organism: Heterodera glycines Gene Locus: chr2:2645242-2648999 Feature type: polypeptideProtein Sequence
Length: 480
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.775 | 1.405 | 1.174 | 0.718 | 0.903 | 0.748 | 0.248 | 0.938 | 1.435 | 1.605 | 1.452 | 1.103 | 1.62 | 1.002 | 0.765 | 1.31 | 0.854 | 0.726 | 0.801 | 0.49 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2626
|
— | — |
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
5.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
RKKR,KRIIEPKFFMKFINKSKTK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.745
|
0.158
|
0.045
|
0.343
|
0.252
|
0.114
|
0.112
|
0.026
|
0.066
|
0.119
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000286
|
5.000
|
4.000
|
Hsc_gene_10456.t1;Hsc_gene_10456.t2;Hsc_gene_11859.t1;Hsc_gene_5596.t1
|
Hsc_gene_11859.t1
|
— | — |
KAH7693056.1 zinc finger protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046983
|
GO:0008150_0.945|GO:0005575_0.924|GO:0110165_0.923|GO:0005622_0.871|GO:0003674_0.823|GO:0005737_0.799|GO:0005488_0.762|GO:0097159_0.680|GO:0003676_0.668|GO:0003677_0.657|GO:0016020_0.590|GO:0009987_0.566|GO:0043226_0.557|GO:0043229_0.535|GO:0065007_0.517|GO:0043227_0.514|GO:0043231_0.509|GO:0050789_0.504
|
IPR008906+393-472+|IPR012337+137-473+|IPR052035+364-479+
|
— |
PF05699+393-472+hAT_family_C-terminal_dimerisation_region
|
— |
PTHR46481+364-479+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-480
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.787
|
54426.900
|
8.605
|
11.500
|
27.083
|
10.417
|
50.417
|
49.583
|
15.208
|
11.875
|
47.708
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
39.552
|
1.538
|
6.350
|
4.460
|
4.439
|
3.499
|
2.229
|
11.846
|
6.911
|
154.973
|
91.518
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.826
|
— | — | — | — | — |
1.647
|
-2.265
|
— | — | — | — | — |
No JSON data available for plots.