Hg_chrom2_TN10mRNA_2758
Organism: Heterodera glycines Gene Locus: chr2:2655033-2658107 Feature type: polypeptideProtein Sequence
Length: 258
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.496 | 0.721 | 0.846 | 0.802 | 1.163 | 1.391 | 0.969 | 1.163 | 1.206 | 1.1 | 0.763 | 1.368 | 2.261 | 0.82 | 1.187 | 1.163 | 1.08 | 1.057 | 0.298 | 0.456 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2627
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
0.991
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.363
|
0.388
|
0.037
|
0.720
|
0.082
|
0.122
|
0.127
|
0.019
|
0.100
|
0.093
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003224
|
2.000
|
1.000
|
Hsc_gene_8955.t1
|
Hsc_gene_6076.t1;Hsc_gene_8955.t1
|
— |
Q9XUE6.2 Probable phosphomannomutase [Caenorhabditis elegans]
|
NP_001255786.1 putative phosphomannomutase [Caenorhabditis elegans];Q9XUE6.2 Probable phosphomannomutase [Caenorhabditis elegans]
|
No
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004615|GO:0009298
|
GO:0005575_0.741|GO:0110165_0.735|GO:0008150_0.688|GO:0003674_0.626|GO:0005622_0.617|GO:0005737_0.591|GO:0009987_0.571|GO:0003824_0.501
|
IPR005002+4-253_5-253_10-251_30-253+|IPR006379+10-233+|IPR023214+10-248+|IPR036412+10-248+|IPR043169+93-196+
|
— |
PF03332+30-253+Eukaryotic_phosphomannomutase
|
G3DSA:3.30.1240.20:FF:000001+93-196+Phosphomannomutase
|
PTHR10466+4-253+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-258
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.694
|
28937.990
|
6.739
|
1.000
|
24.806
|
12.403
|
48.062
|
51.938
|
13.178
|
11.628
|
48.450
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
367.756
|
46.830
|
191.034
|
87.481
|
99.809
|
319.964
|
315.088
|
160.855
|
1000.682
|
400.524
|
657.735
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.798
|
0.763
|
-1.018
|
— |
1.695
|
— |
-1.097
|
1.113
|
— | — | — | — | — |
No JSON data available for plots.