Hg_chrom2_TN10mRNA_2761
Organism: Heterodera glycines Gene Locus: chr2:2689664-2692656 Feature type: polypeptideProtein Sequence
Length: 277
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.847 | 2.519 | 0.394 | 0.747 | 0.602 | 0.926 | 0.86 | 0.722 | 0.481 | 0.39 | 0.602 | 4.247 | 1.103 | 1.597 | 1.252 | 0.928 | 0.947 | 0.766 | 0.278 | 0.212 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2630
|
— | — |
2.000
|
2.000
|
3.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — |
Hsc_gene_11801;Hsc_gene_19009a;Hsc_gene_6070;Hsc_gene_6068
|
— | — |
3-Not_Clustered
|
0.627
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
chloroplast
|
RGQKRRV,RKRKPRSGAAKRRAKERS
|
54-74
|
0.961
|
41-64
|
0.958
|
1-19
|
0.999
|
1.000
|
0.000
|
0.000
|
0.945
|
0.087
|
0.027
|
0.254
|
0.013
|
0.013
|
0.012
|
0.018
|
0.023
|
0.051
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001042
|
3.000
|
2.000
|
Hsc_gene_20673.t1;Hsc_gene_20673.t2
|
Hsc_gene_11801.t1;Hsc_gene_6068.t1;Hsc_gene_6070.t1
|
— | — |
QLK97563.1 secretory protein 4D06 [Heterodera glycines]
|
No
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
93-277
|
1.000
|
1-92
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.967
|
29351.350
|
10.470
|
14.000
|
17.329
|
6.498
|
44.043
|
55.957
|
11.552
|
5.776
|
63.899
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
584.095
|
126.942
|
192.300
|
125.632
|
105.171
|
111.873
|
149.402
|
250.876
|
374.430
|
1876.267
|
1232.622
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.368
|
— |
-0.504
|
-0.288
|
— |
0.426
|
1.063
|
-0.608
|
— | — |
-3.910
|
— | — |