Hg_chrom2_TN10mRNA_2766
Organism: Heterodera glycines Gene Locus: chr2:2758704-2759808 Feature type: polypeptideProtein Sequence
Length: 129
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.082 | 1.803 | 0.987 | 0.267 | 1.163 | 0.596 | 0.923 | 0.775 | 1.206 | 1.362 | 1.527 | 0.456 | 1.938 | 0.149 | 0.633 | 0.554 | 0.89 | 0.94 | 1.789 | 0.912 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2635
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.341
|
0.327
|
0.139
|
0.551
|
0.146
|
0.224
|
0.159
|
0.027
|
0.080
|
0.250
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003227
|
1.000
|
2.000
|
Hsc_gene_21767.t1;Hsc_gene_24401.t1
|
— | — | — |
XP_046544149.1 LOW QUALITY PROTEIN: glutathione synthetase-like [Haliotis rubra]
|
No
|
0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004363|GO:0005524|GO:0006750
|
GO:0008150_0.903|GO:0005575_0.893|GO:0110165_0.889|GO:0009987_0.839|GO:0003674_0.827|GO:0005622_0.812|GO:0005737_0.810|GO:0008152_0.762|GO:0050896_0.750|GO:0044237_0.744|GO:0009058_0.732|GO:0044249_0.716|GO:0003824_0.710|GO:0042221_0.707|GO:0006790_0.676|GO:0043603_0.673|GO:0044272_0.673|GO:0006518_0.670|GO:0006575_0.670|GO:0006749_0.670|GO:0006750_0.670|GO:0019184_0.670|GO:0042398_0.670|GO:0043043_0.670|GO:0043604_0.670|GO:0004363_0.650|GO:0016874_0.650|GO:0016879_0.650|GO:0016881_0.650|GO:1904091_0.650|GO:0005829_0.641|GO:0016020_0.513
|
IPR005615+29-127_29-128+|IPR014049+52-69+|IPR014709+29-51+
|
— |
PF03917+29-127+Eukaryotic_glutathione_synthase,_ATP_binding_domain
|
— |
PTHR11130+29-128+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-129
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.677
|
14566.620
|
8.010
|
2.000
|
27.132
|
13.953
|
46.512
|
53.488
|
14.729
|
12.403
|
47.287
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
15.769
|
0.157
|
0.286
|
0.372
|
0.416
|
0.513
|
0.506
|
0.955
|
0.000
|
67.787
|
38.735
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
-6.864
|
— |
-7.076
|
— | — |
No JSON data available for plots.