Hg_chrom2_TN10mRNA_2768
Organism: Heterodera glycines Gene Locus: chr2:2767018-2773341 Feature type: polypeptideProtein Sequence
Length: 364
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.511 | 1.15 | 0.899 | 0.568 | 1.19 | 1.761 | 0.491 | 0.962 | 1.282 | 1.448 | 0.583 | 1.616 | 2.137 | 0.792 | 1.682 | 0.903 | 0.856 | 1.124 | 0.423 | 0.404 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2637
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
0.981
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
— |
cell_membrane
|
mitochondria
|
— |
38-60
|
0.895
|
— | — |
1-23
|
0.751
|
0.994
|
1.000
|
1.000
|
0.191
|
0.183
|
0.004
|
0.237
|
0.478
|
0.136
|
0.394
|
0.106
|
0.496
|
0.086
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006646
|
1.000
|
1.000
|
Hsc_gene_21872.t1
|
— | — | — |
KAH7731021.1 CRE-FMO-1 protein [Aphelenchus avenae]
|
No
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-364
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.601
|
42223.540
|
7.369
|
3.500
|
26.099
|
11.538
|
49.451
|
50.549
|
14.011
|
12.088
|
43.132
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
426.213
|
126.235
|
388.450
|
122.788
|
35.173
|
152.143
|
110.301
|
229.998
|
22.079
|
1411.214
|
815.871
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.393
|
— |
-1.554
|
-1.836
|
2.128
|
-0.454
|
0.495
|
-0.919
|
-4.154
|
— |
-3.225
|
— | — |