Hg_chrom2_TN10mRNA_2770
Organism: Heterodera glycines Gene Locus: chr2:2785376-2788137 Feature type: polypeptideProtein Sequence
Length: 298
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.585 | 2.029 | 0.671 | 0.694 | 1.063 | 0.688 | 0.519 | 1.51 | 1.79 | 1.633 | 0.966 | 1.579 | 1.957 | 0.71 | 0.822 | 1.055 | 0.605 | 0.966 | 0.258 | 0.691 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2639
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
30-Not_Clustered
|
0.521
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
mitochondria
|
KKIRGIVWHLRAKMK
|
31-71
|
0.841
|
— | — |
1-22
|
0.778
|
0.679
|
0.000
|
0.000
|
0.626
|
0.167
|
0.035
|
0.489
|
0.160
|
0.258
|
0.120
|
0.023
|
0.166
|
0.100
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003229
|
2.000
|
1.000
|
Hsc_gene_11542.t1
|
Hsc_gene_21869.t1
|
— | — |
KAI3417518.1 Ubiquitin carboxyl-terminal hydrolase 7 [Globodera pallida]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.944|GO:0009987_0.879|GO:0065007_0.825|GO:0050789_0.807|GO:0050794_0.784|GO:0032501_0.748|GO:0071840_0.747|GO:0016043_0.744|GO:0032502_0.740|GO:0048856_0.736|GO:0006996_0.705|GO:0048869_0.702|GO:0030154_0.700|GO:0048468_0.698|GO:0044085_0.694|GO:0051128_0.689|GO:0009653_0.687|GO:0022607_0.687|GO:0048513_0.685|GO:0009888_0.681|GO:0007010_0.679|GO:0048646_0.679|GO:0033043_0.677|GO:0007610_0.676|GO:0030029_0.676|GO:0070925_0.676|GO:0030036_0.675|GO:0097435_0.674|GO:0061061_0.673|GO:0007517_0.670|GO:0007519_0.670|GO:0007626_0.670|GO:0010927_0.670|GO:0014706_0.670|GO:0014902_0.670|GO:0014904_0.670|GO:0030239_0.670|GO:0031032_0.670|GO:0032956_0.670|GO:0032970_0.670|GO:0032989_0.670|GO:0036269_0.670|GO:0042692_0.670|GO:0045214_0.670|GO:0048741_0.670|GO:0051146_0.670|GO:0051493_0.670|GO:0055001_0.670|GO:0055002_0.670|GO:0060297_0.670|GO:0060537_0.670|GO:0060538_0.670|GO:0110020_0.670|GO:0140694_0.670|GO:1902903_0.670
|
IPR000210+164-245_164-275_165-274+|IPR011333+129-297_177-273+
|
SM00225+164-275+
|
PF00651+165-274+BTB/POZ_domain
|
— |
PTHR22744+156-296+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-298
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.774
|
33937.380
|
7.718
|
5.500
|
23.490
|
12.752
|
45.973
|
54.027
|
13.423
|
10.067
|
44.966
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
193.541
|
5.107
|
100.531
|
143.302
|
27.491
|
131.366
|
22.901
|
6.093
|
723.739
|
140.143
|
390.256
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.069
|
4.676
|
0.621
|
-2.418
|
2.271
|
-2.514
|
-4.538
|
2.050
|
— | — | — | — | — |