Hg_chrom2_TN10mRNA_2771
Organism: Heterodera glycines Gene Locus: chr2:2789835-2792661 Feature type: polypeptideProtein Sequence
Length: 407
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.429 | 1.828 | 0.759 | 0.593 | 1.474 | 1.764 | 0.293 | 1.106 | 1.802 | 1.195 | 1.787 | 1.445 | 1.502 | 0.614 | 0.802 | 1.123 | 0.685 | 0.558 | 0.756 | 0.506 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2640
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-Not_Clustered
|
0.890
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cytoplasm
|
nucleus
|
RKNKRNRRKKR
|
— | — | — | — |
1-24
|
0.867
|
0.977
|
1.000
|
1.000
|
0.246
|
0.112
|
0.041
|
0.396
|
0.349
|
0.352
|
0.282
|
0.044
|
0.322
|
0.152
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003230
|
1.000
|
2.000
|
Hsc_gene_21807.t1;Hsc_gene_21865.t1
|
Hsc_gene_21868.t1
|
— |
Q7L0R7.1 RING finger protein 44 [Homo sapiens]
|
ORD93258.1 RNF13 [Enterospora canceri]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.904|GO:0005575_0.726|GO:0110165_0.725|GO:0009987_0.694|GO:0003674_0.666|GO:0005622_0.654|GO:0065007_0.600|GO:0016020_0.591|GO:0050789_0.566|GO:0043226_0.553|GO:0050794_0.545|GO:0043229_0.532|GO:0008152_0.514|GO:0043170_0.514
|
IPR001841+321-364_323-363_323-364+|IPR013083+287-368+
|
SM00184+323-363+
|
PF13639+321-364+Ring_finger_domain
|
— |
PTHR46539+231-386+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
379-407
|
1.000
|
1-378
|
5zc4_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.819
|
47605.650
|
9.494
|
15.500
|
30.958
|
10.319
|
57.740
|
42.260
|
17.936
|
13.022
|
38.821
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
767.240
|
3.071
|
3.684
|
69.274
|
198.602
|
13.650
|
19.445
|
16.782
|
8.293
|
3228.767
|
1848.563
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
4.362
|
4.332
|
1.489
|
-3.850
|
— | — | — |
-8.752
|
— |
-3.894
|
— | — |